PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000136426

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WOX

Protein Properties

Length: 311aa MW: 34364.5 Da PI: 7.6687

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000136426	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	47.4	3.2e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+ ++++q+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ MDP0000136426 28 RSRWIPKPQQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	103	2e-33	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW P+p+Qi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q MDP0000136426 27 VRSRWIPKPQQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-8	6	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.078	24	89	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.44E-13	24	95	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-5	26	93	IPR001356	Homeobox domain
Pfam	PF00046	5.2E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MEDHHQGQDP NDSSPSNGST KRSPEPVRSR WIPKPQQILI LESIFNSGMV NPPKEETVRI 60 RKLLEKFGSV GDANVFYWFQ NRRSRSRRRQ RQLQASLEQR TNYNINNNQM ASLSQHQVGG 120 AIQYGVSCCV PTAAPPLAFG ASPNNFLVGS SSSSCGQHLI ADHDVHHSID CVGDQFFSVS 180 DQMGFPEIEQ SSGVTSVLGG GPSDTSNLHF QSVFSTRFQI TLKKTLQRNS VNLFSPFSLN 240 TGWKFWQGLI TVFINGIPTE VPNGPLDMKA VFGQDVLLVH SSGLPLPINE FGFLAHSLES 300 GESYFLVSRP T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017191887.1	0.0	WUSCHEL-related homeobox 11-like
TrEMBL	A0A498ID78	0.0	A0A498ID78_MALDO; Uncharacterized protein
STRING	XP_009343052.1	1e-175	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	6e-57	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	MDP0000136426