PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000137573

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Dof

Protein Properties

Length: 303aa MW: 32687 Da PI: 11.0343

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000137573	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.4	4.9e-36	32	90	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++alkc rCds ntkfCyynny+ sqPr+fCkaCrryWtkGG lrnvP Ggg+rk k+s MDP0000137573 32 QHALKCXRCDSLNTKFCYYNNYNFSQPRHFCKACRRYWTKGGVLRNVPXGGGCRKTKRS 90 6789****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-24	30	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.7E-31	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.136	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MQDIHSVRGG GRFFGGSGGG DPRLRPHQHP NQHALKCXRC DSLNTKFCYY NNYNFSQPRH 60 FCKACRRYWT KGGVLRNVPX GGGCRKTKRS XTKNSSSSSP ISSPSPEXGF STSTCTTASP 120 PATVNHRTQM RNWGQNLKSD PSELXVAKSK YNPGGKRGSK AKLKSGSVSS PSNSSNSSPE 180 SAIFSPSKQN PDKKQRSKPK PKSRSFHSPP DSSNWLTDSP SPPRKSGCLW FFVVYMVVGS 240 GCTTGFIPEV RRRSGSSSPX PNTKTPATTT TSRHHRISSV GPVAAEPVSE SGAHAATRCG 300 EGA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12388	1e-165	fruit\| leaf\| root\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857254	5e-60	DQ857254.1 Glycine max Dof4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_008348381.1	1e-152	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-34	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	MDP0000137573