PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000137854

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 91aa MW: 10112.6 Da PI: 8.3305

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000137854	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.7	7.8e-28	6	79	1	74
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 aCaaCk++rrkC++ C la yfpa++ +f n++++FG+sn+ k+l+++++++r+++++++++e++++ ++P MDP0000137854 6 ACAACKYQRRKCTQTCELAAYFPASRFVEFVNAQHMFGMSNIEKILATVEPDQRPATAETILFEGNIWRNNPSV 79 7***********************************************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.814	5	91	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-25	6	78	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MANSKACAAC KYQRRKCTQT CELAAYFPAS RFVEFVNAQH MFGMSNIEKI LATVEPDQRP 60 ATAETILFEG NIWRNNPSVV ALVLPDSSAN K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018502144.1	1e-50	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A498HT39	4e-61	A0A498HT39_MALDO; Uncharacterized protein
STRING	XP_008361325.1	2e-62	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14432	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-22	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	MDP0000137854