PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000138163
Common NameABI3L1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 440aa    MW: 50267.7 Da    PI: 7.777
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000138163genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.75.6e-29121216190
                    EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                    f+kv tpsdv+k++rlv+pk++ae++    ++++ ++  l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + 
  MDP0000138163 121 FEKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNDNGLFLNFQDRTGKPWRFRYSYWNSSQSYVITKGWSRFVKEKKLDAGDIVSFERGvGEsGKD 216
                    99***************************9444557789************************************************653554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-41116229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-30118226IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-26119215No hitNo description
SMARTSM010193.6E-22121226IPR003340B3 DNA binding domain
PfamPF023621.6E-26121221IPR003340B3 DNA binding domain
PROSITE profilePS5086314.297121226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEFMQRDQKG YSDKEDQDQE QEDQEEEEDI ITTSKFSSSS SHTSNNSNYG SSPKYKAILF  60
PPPPDHHQQY GQQKPRLNIQ NHGSPEATNF MDLSLNKXIQ AAEGGTNEXY WPASCEREHM  120
FEKVVTPSDV GKLNRLVIPK QHAERFFPLD SSSNDNGLFL NFQDRTGKPW RFRYSYWNSS  180
QSYVITKGWS RFVKEKKLDA GDIVSFERGV GESGKDRLFI DWKGRPPPPP PPRLHHHNHY  240
AGGRFCSLLQ RPPPSSVISS MPLRHHEHFL HSNNNIHHPY HHHHHNHQIM NQQYLPHQIH  300
QLQGGRGHHV IHHQYPXVID SVPLYQHANY RSSTTSTSSE SASVASAGKK LRLFGVNMEC  360
SSSPTEKEDH QECQILSSTA IPYHHHHHNL PSSTSSLASA PFQFMRLPNT SSTSSTPPDH  420
HFLSNKGKST TTSLSFYLNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-641162263114B3 domain-containing transcription factor NGA1
5os9_B2e-641162263114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376241.20.0B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_017188567.20.0B3 domain-containing transcription factor NGA1-like isoform X1
RefseqXP_028960582.10.0B3 domain-containing transcription factor NGA1-like isoform X1
SwissprotO827994e-74NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A498JH800.0A0A498JH80_MALDO; Uncharacterized protein
STRINGXP_008376241.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-67B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]