PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000138340
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 212aa    MW: 24190.5 Da    PI: 8.7265
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000138340genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.91.4e-38201472128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                     pGf F+Ptde lv++yLk+k+eg++ ++ +vi+e+d++k+eP d+p    + + kew+fFs+ d ky +g+r nr t +g+ k tg d+++ ++ 
  MDP0000138340  20 LPGFGFSPTDELLVSYYLKNKIEGTDSHFRHVIPEIDVCKYEPCDIPaFFPEVHGKEWFFFSRLDYKY-NGTRCNRXTGQGFYKITGMDRKIRAEe 114
                    59***************************999***************545556889***********9.79**********************985 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++++g k++L+fy+gr pk++kt+Wv hey+l
  MDP0000138340 115 SKAVIGKKRILTFYEGRLPKSKKTNWVXHEYNL 147
                    66779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-4015168IPR003441NAC domain
PROSITE profilePS5100541.97619170IPR003441NAC domain
PfamPF023654.4E-1921147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSXSVAPEEG DAXRVNVSRL PGFGFSPTDE LLVSYYLKNK IEGTDSHFRH VIPEIDVCKY  60
EPCDIPAFFP EVHGKEWFFF SRLDYKYNGT RCNRXTGQGF YKITGMDRKI RAEESKAVIG  120
KKRILTFYEG RLPKSKKTNW VXHEYNLTET KVSSKPTKQM NFVLWRLKNM SASYKKPKGD  180
PIHGELADTG ATSEDYQAAV SDVIAEPVEQ LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-311517613171NO APICAL MERISTEM PROTEIN
1ut4_B3e-311517613171NO APICAL MERISTEM PROTEIN
1ut7_A3e-311517613171NO APICAL MERISTEM PROTEIN
1ut7_B3e-311517613171NO APICAL MERISTEM PROTEIN
3swm_A3e-311517616174NAC domain-containing protein 19
3swm_B3e-311517616174NAC domain-containing protein 19
3swm_C3e-311517616174NAC domain-containing protein 19
3swm_D3e-311517616174NAC domain-containing protein 19
3swp_A3e-311517616174NAC domain-containing protein 19
3swp_B3e-311517616174NAC domain-containing protein 19
3swp_C3e-311517616174NAC domain-containing protein 19
3swp_D3e-311517616174NAC domain-containing protein 19
4dul_A3e-311517613171NAC domain-containing protein 19
4dul_B3e-311517613171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.38060.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354053.21e-155NAC domain-containing protein 91-like
TrEMBLA0A498KME31e-135A0A498KME3_MALDO; Uncharacterized protein
STRINGXP_008354053.11e-155(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.24e-40TCV-interacting protein