PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000138367
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 164aa    MW: 18473.8 Da    PI: 5.911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000138367genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.2e-1228110157243
           GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243
                    +l +tg+rL++fA+ l+++fef++ + +  ++l+ + ++++ +Eal  n++lql++l+de+ ++ +     Lkl ksl+ ++v++ +
  MDP0000138367  28 SLFTTGNRLREFAKLLELHFEFEL-ILTPANELDESCFQLELDEALDANFMLQLYNLFDEKPTVVN---YALKLAKSLKLQIVTLGD 110
                    56789******************9.7999***********************************99...9**************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098511.0031164IPR005202Transcription factor GRAS
PfamPF035144.3E-1028110IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MQIIAITRIF TSSEFIKLVI LGISLLTSLF TTGNRLREFA KLLELHFEFE LILTPANELD  60
ESCFQLELDE ALDANFMLQL YNLFDEKPTV VNYALKLAKS LKLQIVTLGD CTALFTSVAV  120
VTIPVNYLGN LTAPMSILKV VSKLLVSDSF SMMRQNSQRR NKSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1820110151241GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371590.13e-37PREDICTED: scarecrow-like protein 4
RefseqXP_009371591.13e-37PREDICTED: scarecrow-like protein 4
TrEMBLA0A314YUF44e-34A0A314YUF4_PRUYE; Scarecrow-like protein 4
STRINGXP_009371590.11e-36(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-18GRAS family protein