PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000139025

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 215aa MW: 23786 Da PI: 7.6418

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000139025	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.7	2.1e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG+s + ++++a++e++r+++++sl++eA r+ +Pv+Ga+g++l+++++++q++ MDP0000139025 2 SCNGCRVLRKGCSDNCILRQCLqwmedPQAQAHATVFVAKFFGRSGLFSFINAVSESQRPALFQSLIFEAVGRTINPVNGATGLLLSGKWDVCQAA 97 6**********************************************************************************************9 PP DUF260 92 aelall 97 e++l+ MDP0000139025 98 IETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.73	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCILR QCLQWMEDPQ AQAHATVFVA KFFGRSGLFS FINAVSESQR 60 PALFQSLIFE AVGRTINPVN GATGLLLSGK WDVCQAAIET VLRGGALEPL PEYIRDNHYV 120 REHQVRVEQR QSTKKKRPNF AVDDIEDDVA NFQPPDLNLC LTSAAGLTSM TKRRDCRAAT 180 PSVEDSETTT LGSSSSENNC TAGNLERTKL LRLFI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008382222.1	1e-160	LOB domain-containing protein 38-like
Swissprot	Q9SN23	2e-62	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A498IYM8	1e-145	A0A498IYM8_MALDO; Uncharacterized protein
STRING	XP_008382222.1	1e-160	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-64	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	MDP0000139025