PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139073
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 722aa    MW: 79965.3 Da    PI: 6.431
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139073genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-24116216198
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF +    +
  MDP0000139073 116 FCKVLTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFLR--GGN 207
                    99****************************9543..445569************************************************4..378 PP

                    E..EEEEE- CS
             B3  90 felvvkvfr 98 
                    +el+v+v+r
  MDP0000139073 208 GELRVGVRR 216
                    899****98 PP
2Auxin_resp104.61.2e-34242321183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    a+ha++t++ F v+Y+Pr+  s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt+vg++d++p +W +SkWrsLk
  MDP0000139073 242 ASHAVATRTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIVGLEDISP-HWADSKWRSLK 321
                    789***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-40104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-40110231IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-20114216No hitNo description
PfamPF023625.4E-22116216IPR003340B3 DNA binding domain
SMARTSM010191.6E-22116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.351116218IPR003340B3 DNA binding domain
PfamPF065073.3E-32242321IPR010525Auxin response factor
PfamPF023094.5E-11612697IPR033389AUX/IAA domain
PROSITE profilePS5174522.345613694IPR000270PB1 domain
SuperFamilySSF542771.86E-13615689No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MANREGGDLY PELWKACAGP LVDVPRVQER VFYFPQGHME QLEASTPTNQ ELNQGIPQFN  60
LPSKILCRVV NVTLLAEQET DEVYAQITLI PDVNQTDPTS PDPCLPEPQK PAVHSFCKVL  120
TASDTSTHGG FSVLRKHATE CLPALDMTQA TPTQELVAKD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TASHAVATRT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG  300
TIVGLEDISP HWADSKWRSL KVHWDESASI PRPDRVSPWE IEPFVASVLP SLPQPAVVKN  360
KRPRPPTEIP ALDAMSSTGS AMWNSGLTQS HDTSTLSVAA EGKRSENHVV WHHQQADVIS  420
NNNSVPRTQI DGGWLSSQAG GSPHRFQETM EDSKSVSAWP VYSGYSTSNS SKPKNDSMFD  480
HVEKEKKTET GTSCRIFGID FTSHSTCFPA MEKAHPQPIS GPTGTTEGRV SNPSAAESDQ  540
KSDLSKASKE SKPGQLQLSP KETQSKYSCS TSARSRTKVL KVELFLIVFY SEISSIHVID  600
LESLAQVLSC GVCISQKVQM QGIAVGRAVD LTMLEGYDQL IDELEEMFDI KGQIRPGNMW  660
QIVFTDNEGD MMLMGDDPWS EFCDMVKRIF ICWSQDVKKI SAGCELPLSS LEVEGGTVIS  720
SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1701234422355Auxin response factor 1
4ldw_A1e-1701234422355Auxin response factor 1
4ldw_B1e-1701234422355Auxin response factor 1
4ldx_A1e-170934419355Auxin response factor 1
4ldx_B1e-170934419355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360364KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341793.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A498I7X60.0A0A498I7X6_MALDO; Auxin response factor
STRINGXP_008341793.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9