PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139931
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 184aa    MW: 21690.3 Da    PI: 10.1266
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.6e-172266147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg  T+ E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++
    MDP0000139931 22 RGHITPHEESIILDLHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 66
                     6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.31116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-9227IPR009057Homeodomain-like
SuperFamilySSF466893.8E-21274IPR009057Homeodomain-like
PROSITE profilePS5129422.971771IPR017930Myb domain
SMARTSM007171.1E-142169IPR001005SANT/Myb domain
PfamPF002491.4E-132266IPR001005SANT/Myb domain
CDDcd001674.81E-102667No hitNo description
Gene3DG3DSA:1.10.10.602.6E-192872IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
LKRNGKSCRL RWVNYLRPEL KRGHITPHEE SIILDLHARW GNRWSTIARS LPGRTDNEIK  60
NYWRTHFKKR VKAPSDASEG AKTRLLRRQK SHNQQQQQQN LQVDQEVKRI MSLLDENETK  120
LPLYWPHAAD HHQEQGFFYS MLDGNIVNVS LPEAASSNED NFLWDGLWNL NDVHANFINT  180
TRQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1737140108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028952349.11e-135transcription factor MYB24-like
TrEMBLA0A498HIJ51e-133A0A498HIJ5_MALDO; Uncharacterized protein
STRINGXP_008360483.11e-135(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.18e-58myb domain protein 305