PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139971
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 776aa    MW: 86601 Da    PI: 6.5093
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.85e-941705402373
           GRAS   2 velLlecAeavssgdlelaqalLarlsel......aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                    +e L+++A++++s++l+laq +L rl+++      + p g+p+qR+a yf+ AL++ l++     +++ + + +s+++ ++++ a+k fs +sP++
  MDP0000139971 170 IEELIRAADCFDSDELQLAQVILDRLNNRmrssspSKPVGKPLQRAAVYFKDALQSLLNG-----SDTAAREFSSSSDIVHTIRAYKSFSGISPVP 260
                    679************************98876333345679*******************.....444444445556699**************** PP

           GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     fsh+t+Nqa+lea++g+  +H+iDfdi+ G+Q+++L+++La+++     ++    pp lRiT+v+++e   + e++ ++e+L++fA+el+++f+ 
  MDP0000139971 261 MFSHFTTNQALLEALNGSAFIHVIDFDIGLGGQYASLMKELAEKAdvasrNKgnqvPPVLRITAVVPEE--YAVETRLIRENLSQFAQELKIRFQV 354
                    ******************************************999766551156679**********66..9999********************* PP

           GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsle 272
                    +++ ++ +e++++++ ++  gE++aV l+  + r l ++    ++++ +L  ++++sP vvv+v+ e   d +++sF + f++ le++s +++sl+
  MDP0000139971 355 EFVPVRMFEMMSFKAVKFMDGEKTAVLLSPYILRRLCSQ----NNISGFLGDMRRVSPSVVVFVDGEgmGDSGTTSFRKNFVSGLEFFSIMLESLD 446
                    **9999************************999998444....44667*******************65566999********************* PP

           GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                    a++++ s+  +k+E +ll ++i+ +v ++g++          Wre ++ aG+++++ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv
  MDP0000139971 447 ASVAASSDVVKKIETFLLLPKIQAAVEAAGRR-------IPPWREVFQGAGMRAMELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALV 535
                    ******************************98.......99******************************************************* PP

           GRAS 369 svSaW 373
                    ++SaW
  MDP0000139971 536 ATSAW 540
                    ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.242143521IPR005202Transcription factor GRAS
PfamPF035141.7E-91170540IPR005202Transcription factor GRAS
PfamPF031346.0E-24601677IPR004345TB2/DP1/HVA22-related protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MRVPVSSPHS NNNNQSPKHS TQTNNQSVNF HLGISNLGGY EPTSVLDLRH SPSPVSAEKP  60
SKILAISDVL SHSNHDPVEW EEQVDWDSIM KDLGLHDDNV PNLKNSIPQL NSNDPQISEY  120
LHPQPFDPTQ LVHSDYSINL SEVYSSQNCY DHAINDFHQS GNWNVGVDFI EELIRAADCF  180
DSDELQLAQV ILDRLNNRMR SSSPSKPVGK PLQRAAVYFK DALQSLLNGS DTAAREFSSS  240
SDIVHTIRAY KSFSGISPVP MFSHFTTNQA LLEALNGSAF IHVIDFDIGL GGQYASLMKE  300
LAEKADVASR NKGNQVPPVL RITAVVPEEY AVETRLIREN LSQFAQELKI RFQVEFVPVR  360
MFEMMSFKAV KFMDGEKTAV LLSPYILRRL CSQNNISGFL GDMRRVSPSV VVFVDGEGMG  420
DSGTTSFRKN FVSGLEFFSI MLESLDASVA ASSDVVKKIE TFLLLPKIQA AVEAAGRRIP  480
PWREVFQGAG MRAMELSQFA DFQAQCLLGK VQVRGFHVAK RQAELVLCWH DRALVATSAW  540
SAAITFLLSI TLMDVVGPMK PASRAWFRVP SSLVGLRLLL CPLGSNIVLR TACCSVGIGI  600
PVYCTCKAIE RKDRIAQEKW LLYWAAYGSF SLVEIFSDKL ISWCPMYYHM KFAFLVWLQL  660
PTVDGAKQLY TSHLRPFFLK HQARIDRVLG LTYGEVHKLL SAHQAEIEYA RVMIMKILGS  720
VCCPPLFLTD QPPNSDVPRQ NAIEGQIRPP NPELPGQNVI EDQTRPAPVS ESDHED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2817554125379Protein SCARECROW
5b3h_A1e-2817554124378Protein SCARECROW
5b3h_D1e-2817554124378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.132590.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356715.20.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-154SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A498KJF00.0A0A498KJF0_MALDO; Uncharacterized protein
STRINGXP_008363118.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-153GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]