PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000140166

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bZIP

Protein Properties

Length: 184aa MW: 21430.2 Da PI: 9.2288

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000140166	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.2	4.1e-14	96	150	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+ +NRe+ArrsR RKk +e L+ +v+ L+ eN++Lk++l +++ l MDP0000140166 96 RKRRRMTSNRESARRSRWRKKRHLEDLTSEVDRLKIENQELKNRLGLVAQKCHVL 150 5779999****************************************99999866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-12	89	150	No hit	No description
SMART	SM00338	6.7E-14	92	156	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.07	94	146	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.75E-12	96	151	No hit	No description
Pfam	PF00170	7.7E-12	96	150	IPR004827	Basic-leucine zipper domain
CDD	cd14702	6.13E-17	97	148	No hit	No description
PROSITE pattern	PS00036	0	99	114	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MCILSFDYKY STPPLRSFPF FSSFPPPLPF TQMMMSSSAM XFIHEPADMG RFECPVQETV 60 LTTAEIQELL SLLQAGNSAS PSSEGSNREV DTVDERKRRR MTSNRESARR SRWRKKRHLE 120 DLTSEVDRLK IENQELKNRL GLVAQKCHVL WRENDRMTSE SLALRARLSD LYRILIAMQT 180 QYSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	RKRRR
2	97	116	RRRMTSNRESARRSRWRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377948.2	1e-107	basic leucine zipper 4-like
Refseq	XP_009361030.2	1e-106	PREDICTED: bZIP transcription factor 2-like
Swissprot	Q9LQ65	5e-26	BZIP4_ARATH; Basic leucine zipper 4
TrEMBL	A0A498HUR1	1e-100	A0A498HUR1_MALDO; Uncharacterized protein
TrEMBL	A0A498J9Z7	1e-106	A0A498J9Z7_MALDO; Uncharacterized protein
STRING	XP_008377948.1	1e-101	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5996	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	6e-29	basic leucine-zipper 4

Link Out ? help Back to Top
Phytozome	MDP0000140166

Publications ? help Back to Top
Guo YL, et al. Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis. Plant Physiol., 2011. 157(2): p. 757-69 [PMID:21810963] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Ma H, et al. ZmbZIP4 Contributes to Stress Resistance in Maize by Regulating ABA Synthesis and Root Development. Plant Physiol., 2018. 178(2): p. 753-770 [PMID:30126870]