PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000140324
Common NameMYBR3
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 143aa    MW: 16149 Da    PI: 10.8544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000140324genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-1473117347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
    MDP0000140324  73 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 117
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.70366122IPR017930Myb domain
SuperFamilySSF466892.51E-1768123IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-1769120IPR006447Myb domain, plants
SMARTSM007172.4E-1070120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-1272116IPR009057Homeodomain-like
PfamPF002496.1E-1273117IPR001005SANT/Myb domain
CDDcd001672.67E-1073117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MLFGVRLVVD SMRKSVSLNN LSQYEQPQEA ASNNGNNGTA AGKDDAAPGY ASENDVVHNS  60
GGNRERERKR GVPWTEEEHK LFLLGLQKVG KGDWRGISRN FVKTRTPTQV ASHAQKYYLR  120
RSNLNRRRRR SSLFDITTDT VTI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119800.0bud| cell culture| fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1967760.0AY196776.1 Malus xiaojinensis transcription factor Myb1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315795.11e-101transcription factor MYB1R1-like
SwissprotQ2V9B05e-55MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A498HWU51e-99A0A498HWU5_MALDO; Uncharacterized protein
TrEMBLD9ZJ821e-99D9ZJ82_MALDO; MYBR domain class transcription factor
STRINGXP_008360819.11e-100(Malus domestica)
STRINGXP_008360820.11e-102(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.21e-52MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]