PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000141137

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Nin-like

Protein Properties

Length: 286aa MW: 32673.6 Da PI: 5.6771

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000141137	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.2	2.4e-26	146	193	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++l++++kyF+ pi++AAkeL+v+lTvLKr+CR+++I+RWPhRkiksl MDP0000141137 146 LELDEIQKYFDVPITQAAKELKVGLTVLKRRCRELNIMRWPHRKIKSL 193 7899******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.608	124	216	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-23	146	193	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MADSISYQLL FPKIETDPHE FNSSIHAAAL DSLHLENFNG FDSPPLPLGC NSNQLPQMGS 60 KDFEDSGIWD YILDDAAFPS TFGYEVVDEK PLTTMAESVD CSNSVSGDSD DVLRTIEWGM 120 KIWGKDEEGS RTKNESFCKK RCATPLELDE IQKYFDVPIT QAAKELKVGL TVLKRRCREL 180 NIMRWPHRKI KSLNALIENV KCHFCPMLLV PLETGKILVP WEYSFTLGMG LTNDVMMLEE 240 HRRLLEQMPD KELPERAKRL RQACFKTNYK KKRALCLTAL PVHDLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376707.2	0.0	protein RKD1
TrEMBL	A0A498JJF8	0.0	A0A498JJF8_MALDO; Uncharacterized protein
STRING	XP_009357371.1	1e-177	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-37	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	MDP0000141137