PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000141505

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 185aa MW: 21094.3 Da PI: 7.3052

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000141505	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	131.4	9.9e-41	2	183	187	374
GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 ed++ + ++v+ +Ea++V l l ++ +++ +le+ +++ +++l P v+vv+ ea+hns+s+++rf++al yysa+fd+le+ + +++ +r MDP0000141505 2 EDVKDQLFDVEDDEAVVVYAPLILRTMISRPSCLEN----LVRXMRTLXPCVMVVIXVEANHNSPSLVNRFIDALFYYSAIFDCLETCM-KQEMNR 92 677778899*****************88888888....*******************************************96.444555 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E l+++ i+n+v +eg+er++r ++e Wr+ + ++ + +++ls+ a qa+l +k++s +++ + ++l+ gWk+ p+ s+SaW+ MDP0000141505 93 VLIE-GLFHEGIRNIVVAEGSERVARSVKMEXWRAFFARFRMVEINLSNAALFQASLXAKKYGSPPCTLDRNGKCLTVGWKGTPIHSLSAWK 183 5555.56****************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.22	1	163	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-38	2	183	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEDVKDQLFD VEDDEAVVVY APLILRTMIS RPSCLENLVR XMRTLXPCVM VVIXVEANHN 60 SPSLVNRFID ALFYYSAIFD CLETCMKQEM NRVLIEGLFH EGIRNIVVAE GSERVARSVK 120 MEXWRAFFAR FRMVEINLSN AALFQASLXA KKYGSPPCTL DRNGKCLTVG WKGTPIHSLS 180 AWKFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-13	42	182	238	378	Protein SCARECROW
5b3h_A	1e-13	42	182	237	377	Protein SCARECROW
5b3h_D	1e-13	42	182	237	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028956538.1	1e-132	DELLA protein GAI1-like
TrEMBL	M5VUD5	1e-109	M5VUD5_PRUPE; Uncharacterized protein
STRING	XP_008363729.1	1e-131	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-26	RGA-like 2

Link Out ? help Back to Top
Phytozome	MDP0000141505