PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000141709
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 395aa    MW: 43222.6 Da    PI: 10.5515
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000141709genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.46e-1693176186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  v +L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l+
  MDP0000141709  93 EWSEGAVSTLLEAYETKWALRNRAKLKGHDWEDVAIHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATADG------SSWPLYPRLD 176
                    5*************************************854444555566679****************99997......4699999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-1991176No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MQNEAVAPKG ITTQLLTQVV MNPPKVYREK KGINKAKAKI RRAQKGKLCL NGGSILDGGG  60
KEQKEIDESP PRSKPPQQPP LGGSGSDRLK RDEWSEGAVS TLLEAYETKW ALRNRAKLKG  120
HDWEDVAIHV SSRANCTKSP KTQTQCKNKI ESMKKRYRSE SATADGSSWP LYPRLDLLLR  180
GSGLSPTTAA AAAAAAAATV PPSLQPPLPL HPPIPQNNHP LMLLEPSAPA PLPPPPLPPA  240
PPPLMGAAQN SFGSNGVDHR VAKEDGGGMK LSDHASDKNP LEVDSSTPAL YSDKEKLRSK  300
RMKRKIEKKK RRRREEVEVA ESIRWLAEVV VRSEQARMDT MREIERMRAE AEAKRGEMDL  360
KRTEIIANTQ LEIARLFAAA GVGKGVDSSL RIGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312KKKRRR
2307313KKKRRRR
3308313KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532030.0AB853203.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH155.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375373.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A498JII10.0A0A498JII1_MALDO; Uncharacterized protein
STRINGXP_008375373.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.15e-51sequence-specific DNA binding transcription factors