PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000142091
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 273aa    MW: 30764.4 Da    PI: 8.1566
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000142091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-18103157256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    rk+ +++keq   Lee F++++++++++++eLAk+l+L  rqV vWFqNrRa+ k
  MDP0000142091 103 RKKLRLSKEQSLLLEETFKEHNTLNTKQKQELAKQLNLRARQVEVWFQNRRARTK 157
                    788899***********************************************98 PP
2HD-ZIP_I/II118.92.7e-38103192191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    +kk+rlskeq+ lLEe+F+e+++L++++K+ela++L+l++rqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+e+n+rL+kev+eLr +l
  MDP0000142091 103 RKKLRLSKEQSLLLEETFKEHNTLNTKQKQELAKQLNLRARQVEVWFQNRRARTKLKQTEVDCELLKRCCEKLTEDNRRLHKEVQELR-AL 192
                    69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.7E-19972IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.8E-1983157IPR009057Homeodomain-like
SuperFamilySSF466892.22E-1986160IPR009057Homeodomain-like
PROSITE profilePS5007117.68699159IPR001356Homeobox domain
SMARTSM003896.1E-15101163IPR001356Homeobox domain
CDDcd000863.37E-15103160No hitNo description
PfamPF000468.9E-16103157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
SMARTSM003409.2E-26159202IPR003106Leucine zipper, homeobox-associated
PfamPF021839.3E-11159193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEKPSHPMQN HPHRTSWNEI FQFPDRNPNT RSFIGGIDVN EAPSMADFEE ENGISSPNST  60
VSSLSGKRSD REPIVDENEG ERTSCSHGGG SDDEDGYGGD MSRKKLRLSK EQSLLLEETF  120
KEHNTLNTKQ KQELAKQLNL RARQVEVWFQ NRRARTKLKQ TEVDCELLKR CCEKLTEDNR  180
RLHKEVQELR ALKLSPHFYM QMNPPTTLTM CPSCQRVAVS SSSSSAAVPA SSTTLANAPT  240
RQHGPPNIQR PIPISPWAKL PIQHPTLDAS APR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101107SRKKLRL
2151159RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017180759.20.0homeobox-leucine zipper protein HAT3
SwissprotP466021e-100HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A498KGG90.0A0A498KGG9_MALDO; Uncharacterized protein
STRINGXP_008343628.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-87homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]