PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000142237
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 258aa    MW: 27960.3 Da    PI: 7.9855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000142237genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000281802181255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  MDP0000142237 180 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 218
                    6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.681168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-10178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-6178222No hitNo description
Gene3DG3DSA:4.10.280.101.9E-7182224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNRGGCQSSP VQQMMAGNPN WWSINSMRPP STQPSMNISP FFHPPSPLPP NFLIPQFAPN  60
NNNNTSPPSS TISSSGLAIP SWHIENNNQE LPESWSQLLL GGLVGEDEKG IMQSTTPSAA  120
SSPKSSCVTS FSNNNMLDFS SKSDVRHPPP HRSSDQCNNG GALKRARVQP SSTPTTFKVR  180
KEKLGDRITA LHQLVSPFGK TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMLQQP  240
QSVVQGERNC MFPEDPGQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.112491e-177bud| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450103e-73BT145010.1 Lotus japonicus clone JCVI-FLLj-18O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028965996.11e-126transcription factor bHLH68 isoform X3
TrEMBLA0A498KEB51e-123A0A498KEB5_MALDO; Uncharacterized protein
STRINGXP_008390529.11e-158(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-44bHLH family protein