PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000142490
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 615aa    MW: 67870.1 Da    PI: 7.3006
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000142490genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43e-12321375153
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                    s+y+GV++++++gr++A+++d  ++  g  rk  + g ++t+e+Aa+a++ a++k+
  MDP0000142490 321 SQYRGVTRHRWTGRYEAHLWDnTCKkEGqSRKGRQ-GGYDTEEKAARAYDLAALKK 375
                    78*******************87776664446655.77***************986 PP
2AP241.43.5e-13386436355
            AP2   3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GV +++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  MDP0000142490 386 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 436
                    9****99**********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-10321376IPR016177DNA-binding domain
CDDcd000181.43E-14321374No hitNo description
PfamPF008478.5E-9321375IPR001471AP2/ERF domain
SMARTSM003801.4E-8322377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-8322374IPR001471AP2/ERF domain
PROSITE profilePS5103214.276322374IPR001471AP2/ERF domain
PRINTSPR003674.5E-6323334IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-16384445IPR016177DNA-binding domain
CDDcd000182.82E-23384446No hitNo description
SMARTSM003803.6E-30385450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-18385444IPR001471AP2/ERF domain
PROSITE profilePS5103219.124385444IPR001471AP2/ERF domain
PfamPF008479.2E-8386436IPR001471AP2/ERF domain
PRINTSPR003674.5E-6426446IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MKSMSNDXSN SNSNNNWLDF SLSPNMKIES SSSSXAAASF FHSPPHFNYG IYYGLEGGGG  60
RGRGEDNSPV LYSPLSMMPL KSDXSLCMME ALNRSQHHPQ AAMVTTTSPT PKLEDFFGGA  120
AMGTHQYESS DREAMALSLD SMFYHQNPHP TTQHHVPSNH QNLMSHSLQQ HQQQTQQHQQ  180
QYSSSYYSGL RTHAMILEEG HKQTHVSADY YNMHPARIGL DQSIAEMKSW VSRNNSMDQN  240
NMAAGCMGEN GGLSYGDLQC LSLSMSPGSQ SSCVTSSQQI SPTVTTDCAT LVDTKKRGLE  300
KVDQKQIVHR KSLDTFGQRT SQYRGVTRHR WTGRYEAHLW DNTCKKEGQS RKGRQGGYDT  360
EEKAARAYDL AALKKSSGFS RGASMYRGVT SRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  420
EEAAEAYDIA AIKFRGLNAV TNFDITRYDV DQIMSSNTLL ASELAKRNKE VVPVNEATNQ  480
NNVAQIGNGE AVVSLKNISE GEDWEMALYQ SSSQQLDQKQ LSAETRNVTQ AEAEDSGKMG  540
AAHFSNASSL VTSLGSSREG SPDKSSQPSF FGMPPSASKF FTSSSDAVSS WIPTVQSRPA  600
LTNPHMRIFT AWTDA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138060.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed at the base of the stem. Expressed in stems. Expressed a low levels in crown roots and seeds (PubMed:21807632). Expressed in the stem region where adventitious (crown) root initiation occurs (PubMed:21481033). {ECO:0000269|PubMed:21481033, ECO:0000269|PubMed:21807632}.
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360817.20.0LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-103CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A498I3340.0A0A498I334_MALDO; Uncharacterized protein
STRINGXP_008360817.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.14e-93AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]