PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000142583

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 223aa MW: 25599.4 Da PI: 9.4286

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000142583	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.1	1.6e-32	144	202	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk ++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ MDP0000142583 144 LDDGYRWRKYGQKAVKANKFPRSYYRCTYEGCNVKKQVQRLSKDEGVVVTTYEGMHTHP 202 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-33	129	202	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-29	136	203	IPR003657	WRKY domain
PROSITE profile	PS50811	29.769	139	204	IPR003657	WRKY domain
SMART	SM00774	3.4E-38	144	203	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	145	202	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEKYQMFFPC TSSANYPNPN STNIDHHHRV GSSHVYTNNF DGRVDQTSDA FLGLKSTMTT 60 TENHVGSSSD EVLVHKDGHP YQQYYQQHYP SANAGMSNVI VGADHSSVDP HRANNNDSGK 120 KKKGEKKMKK PKYAFQTRSQ VDILDDGYRW RKYGQKAVKA NKFPRSYYRC TYEGCNVKKQ 180 VQRLSKDEGV VVTTYEGMHT HPIDKPSDNF ERILNQMQIY TPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-27	134	203	7	76	Probable WRKY transcription factor 4
2lex_A	5e-27	134	203	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341671.3	1e-169	probable WRKY transcription factor 75
TrEMBL	A0A498HID1	1e-168	A0A498HID1_MALDO; Uncharacterized protein
STRING	XP_008341671.1	1e-169	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	6e-54	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	MDP0000142583