PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000143487
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 279aa    MW: 31924.9 Da    PI: 9.7326
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000143487genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.3e-141662147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +lv +++++G  +W++ ++  g+ R++k+c++rw +y
    MDP0000143487 16 KGPWSPEEDHKLVAYIQRYGIWNWSRMPKPAGLARSGKSCRLRWVNY 62
                     79******************99***********************99 PP
2Myb_DNA-binding46.86.7e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ ++E e ++++++  G++ W++Ia++++ gRt++++k++w++++
    MDP0000143487  69 RGNFGKDEXETILELHQAIGNR-WSAIAARLP-GRTDNEIKNYWHTHM 114
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4161163IPR017930Myb domain
SuperFamilySSF466894.87E-2814110IPR009057Homeodomain-like
SMARTSM007176.6E-81565IPR001005SANT/Myb domain
PfamPF002492.4E-121662IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-201770IPR009057Homeodomain-like
CDDcd001671.18E-61862No hitNo description
PROSITE profilePS5129421.13164118IPR017930Myb domain
SMARTSM007177.0E-1468116IPR001005SANT/Myb domain
PfamPF002491.8E-1369113IPR001005SANT/Myb domain
CDDcd001675.44E-871114No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2471117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAKRTQRCEK TVAVKKGPWS PEEDHKLVAY IQRYGIWNWS RMPKPAGLAR SGKSCRLRWV  60
NYXRPDIKRG NFGKDEXETI LELHQAIGNR WSAIAARLPG RTDNEIKNYW HTHMKKRFKA  120
GIESVHEEAK GSGDKEASKN KLSEAGQLFL VDEATKVASL KSEATCSASS SVYFPVWEFD  180
DQKGQIAEQS VCASDVTFGE LQSLDSQVWQ QEPIFPCDSY INHVTSDYWV ILSKHRQRYP  240
PAAVGLMTVE SLKLRSKHPL TVFTKNVCRF RWKLDPSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25161187108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159910.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744690.0DQ074469.1 Malus x domestica MYB21 mRNA, complete cds.
GenBankKC6912480.0KC691248.1 Malus x domestica MYB transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315718.11e-171myb-related protein Myb4-like
TrEMBLQ2LME31e-170Q2LME3_MALDO; MYB transcription factor
STRINGXP_008349268.11e-171(Malus domestica)
STRINGXP_008383975.11e-171(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.11e-54myb domain protein 74