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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000143749 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | ARF | ||||||||
| Protein Properties | Length: 896aa MW: 98043.3 Da PI: 5.1934 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 77.3 | 1.6e-24 | 140 | 241 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+lt sd++++g +++p++ ae+ ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F ++++
MDP0000143749 140 FCKTLTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDSVLFI--RDEK 231
99*********************999*****954444.4.48************************************************..4577 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+l+++v+r+
MDP0000143749 232 SQLLIGVRRA 241
778****997 PP
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| 2 | Auxin_resp | 108 | 1e-35 | 266 | 349 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++ ++ka+ +++s+G Rf m fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
MDP0000143749 266 AAHAAANRSPFTIFYNPRACPSEFVIPLATFQKAVFgTQLSIGIRFGMVFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 349
79********************************988*********************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 5.36E-47 | 127 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.2E-41 | 133 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.09E-22 | 139 | 240 | No hit | No description |
| SMART | SM01019 | 1.2E-24 | 140 | 242 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 13.126 | 140 | 242 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 3.3E-22 | 140 | 241 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 4.0E-31 | 266 | 349 | IPR010525 | Auxin response factor |
| SuperFamily | SSF54277 | 4.05E-9 | 775 | 861 | No hit | No description |
| PROSITE profile | PS51745 | 24.219 | 782 | 866 | IPR000270 | PB1 domain |
| Pfam | PF02309 | 5.7E-7 | 827 | 868 | IPR033389 | AUX/IAA domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 896 aa Download sequence Send to blast |
MMGSVEEKLK TGCLLDEMKL LKELQDHSGT RKAINSELWH ACAGPLVCLP QVGSLSYYFP 60 QGHSEQVAVS TKRTATSQIP NYPNLPSQLL CQVQNVTLHA DKETDEIYAQ MSLKPVSSER 120 DVFPVPDFGM RPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLD FTMQPPTQEL 180 VVRDLHDNTW TFRHIYRGQP KRHLLTTGWS LFVGAKRLRA GDSVLFIRDE KSQLLIGVRR 240 ANRQQTTLPS SVLSADSMHI GVLAAAAHAA ANRSPFTIFY NPRACPSEFV IPLATFQKAV 300 FGTQLSIGIR FGMVFETEES GKRRYMGTIV GISDLDPLRW PGSKWRNLQV EWDEPGCCDK 360 QNRVSSWEIE TPESLFIFPS LTSSLKRLMH SGFLGAETEW GNMTKRSFIR VPEIGNGNSF 420 PYPISNLCSE QLVNMLMKPQ LVNHAGTLAT LQQESAANVD SVDMKAMQAK INQKNPADGV 480 NANAPSHGIP PGNLNTVAKF GSQAPVGSST EKMKSEPELS ADQLSQLSSA GQGIEDKLAA 540 GFASPYNHMN QLTFANQNPS SAQLQTSPRP MQPLDSLLYH SQQTELPHSD FNGMNSSLPF 600 LDNDECMFYS SCLPFSGALR SPGPLSAFGL PDSSTVLTDA NTSSLTSIGQ DMWDNSLINS 660 SSLRDLSDES NNQSGIYGCP NIDVGSCLST VVDPSVSSTI LDDFSTLKNA NFQNSSDCLV 720 KNLSSSQDLQ SQITSVSLGD SQAFSRQDLA DASGGTSSSN VELDESSLLQ NSSWHPVVAP 780 VRTYTKVQKT GSVGRSIDVT NFKNYEELCS AIECMFGLEG LLNDPRGSGW KLVYVDYEND 840 VLLVGDDPWE EFVGCVRCIR ILSPTEVQQM SEEGMKLLNS AAMQGMNSTM SEGGRP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 374 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.8554 | 0.0 | bud| fruit| stem | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
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| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008387956.1 | 0.0 | auxin response factor 5 | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A498HSP0 | 0.0 | A0A498HSP0_MALDO; Auxin response factor | ||||
| STRING | XP_008387956.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8991 | 32 | 41 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000143749 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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