PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000144544
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 333aa    MW: 36935.5 Da    PI: 9.219
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000144544genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11112160247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW+  E+e l  +v+++G+g+Wk+I +      + Rt+ ++k++w++ 
    MDP0000144544 112 KRWSLLEEETLRTGVQKYGKGNWKLILNSYRdifEERTEVDLKDKWRNM 160
                      59*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.689106165IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-12107160IPR009057Homeodomain-like
SuperFamilySSF466891.09E-14108160IPR009057Homeodomain-like
SMARTSM007176.2E-8110163IPR001005SANT/Myb domain
CDDcd116602.01E-20112161No hitNo description
PfamPF002492.4E-9113160IPR001005SANT/Myb domain
CDDcd019601.35E-30245332No hitNo description
SuperFamilySSF476991.24E-19245332IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
Gene3DG3DSA:1.10.110.103.6E-19245332No hitNo description
PRINTSPR003821.5E-15246262IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.5E-15266280IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.5E-15287302IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.5E-15304321IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.5E-15322333IPR000528Plant lipid transfer protein/Par allergen
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006869Biological Processlipid transport
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MXXIHQNDPQ SSGIEKDVPN PPVDQGGTES VQTDAANLRN ASLNNQNNVA RSSLMERNST  60
ARTFEWEDSI DTSQEXTKKD AGRLHLPSPK RTAVSPLKKY GNIRLTKRRK VKRWSLLEEE  120
TLRTGVQKYG KGNWKLILNS YRDIFEERTE VDLKDKWRNM EGKYHSSSSI RKVRRKDQGK  180
QVISDTTKTV EVMVNLHIAK TKALQQXGRX GNYGKDSGVT VSRAAFTVVL LSMLVTAPYT  240
VNATVTCGQV VTLLTPCIPF GVFGGDVPPD CCAGIKGLHD IQNTAEDRRT ACSCIQQGAA  300
MIPGLDYDRV NTLGDRCGSP CPYTVYPSTN CSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2alg_A7e-20245332289non-specific lipid transfer protein
2alg_B7e-20245332289non-specific lipid transfer protein
2b5s_A7e-20245332289Non-specific lipid transfer protein
2b5s_B7e-20245332289Non-specific lipid transfer protein
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498ISV59e-93A0A498ISV5_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-15MYB_related family protein