PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000144597
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29438.6 Da    PI: 9.8087
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000144597genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.2e-30959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++ rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++g++ye+ss
  MDP0000144597  9 KRIENNTSRQVTFSKRRKGLLKKAYELSVLCDAEVAVIVFSQKGRIYEFSS 59
                   79***********************************************96 PP
2K-box661.3e-221121941597
          K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++i ++K +l++eq+e+ + +e+ l +en +Lr++
  MDP0000144597 112 LHLKHESAIIAKKIEILEASQRKLLGNDLDSCPVEELQEISSQLERSLRSISERKAQLYTEQMEQHKARERFLLQENAQLREE 194
                    57899***************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-39160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.60E-39376No hitNo description
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-32388IPR002100Transcription factor, MADS-box
PfamPF003197.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.607111201IPR002487Transcription factor, K-box
PfamPF014864.1E-22113195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVRKKVEMKR IENNTSRQVT FSKRRKGLLK KAYELSVLCD AEVAVIVFSQ KGRIYEFSSS  60
DMQRTINRYH KHENGSGPTN KVEVEQYVQA ETCLSNEKGK KKRNSGRGFK LLHLKHESAI  120
IAKKIEILEA SQRKLLGNDL DSCPVEELQE ISSQLERSLR SISERKAQLY TEQMEQHKAR  180
ERFLLQENAQ LREECCAKPW MEFSPQEKRA SASVSNEKAG ASASAPINYR SQSSMSSEVD  240
TDLLIGQPMV RAVDRIAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-21172172Myocyte-specific enhancer factor 2B
1tqe_Q7e-21172172Myocyte-specific enhancer factor 2B
1tqe_R7e-21172172Myocyte-specific enhancer factor 2B
1tqe_S7e-21172172Myocyte-specific enhancer factor 2B
6c9l_A7e-21172172Myocyte-specific enhancer factor 2B
6c9l_B7e-21172172Myocyte-specific enhancer factor 2B
6c9l_C7e-21172172Myocyte-specific enhancer factor 2B
6c9l_D7e-21172172Myocyte-specific enhancer factor 2B
6c9l_E7e-21172172Myocyte-specific enhancer factor 2B
6c9l_F7e-21172172Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8468330.0DQ846833.1 Malus x domestica SOC1-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376826.11e-168MADS-box protein SOC1-like isoform X1
RefseqXP_017189909.11e-168MADS-box protein SOC1-like isoform X1
TrEMBLA0A498KLX31e-164A0A498KLX3_MALDO; Uncharacterized protein
STRINGXP_008376826.11e-167(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-60AGAMOUS-like 42