PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000144669

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 997aa MW: 111575 Da PI: 8.1286

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000144669	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.6	3.1e-08	243	303	20	81
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 + +rgk ++ + ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y MDP0000144669 243 THSRGKTRGDKDMEVADFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGSEREQV-GKSY 303 4567788888999*************************************9744443.4445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	3.12E-16	822	979	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	2.5E-5	848	943	No hit	No description
CDD	cd00180	1.07E-11	851	979	No hit	No description
Gene3D	G3DSA:1.10.510.10	0.001	951	987	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence Send to blast
MGDKKGETTK KNPQQTQQQQ QQKQQISPSP NDQQPPPTAI NISGAAAAAG VPFNIPPPLF 60 VPTGTPTTSS SSPFDQHQFE AAVNPKRPRF TSTTGQWKLL PSPSSQQKQP QVPILPSEST 120 PSPXKKKTQL SQPHVSTIGA ASSSDTASSS PPHSPLPSLS ATSGQDTNKT VAGDPQNLVH 180 HPHQFRKGKY VSPVWKPNEM LWLARGWRIQ YQGGAAGGSS DHGSGSSSRT EQLQTESGGA 240 TTTHSRGKTR GDKDMEVADF LQKHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGSEREQVG 300 KSYFRLSPYE RKLHRLPASF DEEVFVELSQ FMGSRTRTPQ SRLGSIGDDT RSALVMTRSL 360 PQPPSFKEDD FPLSGRGNQL MIMRGEGEPF YHGGRGTFLG FHHHDQSSID FTTGLSSSSS 420 KELRRIGKIR MTWEESVSLW AEEGEHHRGR VRLQGLSFLN ADELTFFDDS MVACTMEAFE 480 DGPFGGFSVD RFVSGQQVKV LGRRKPSSTN SAMPPWEFQD PTEYYVGCLR VPPPSLPTLL 540 ELQWYVQEPP PEELRFPLRK DVYRDLPQGK EIFFTTSTEL LDCRAITYDI LSPIVRTNPS 600 LAAATATSRD SFIPIWDDCI NRIVSKFCSL EMVFIRKPNS SSPTEPLQDQ WPNMTGFVRN 660 FCLWRGEEAH NLKDVRDINP SSSIVEKLLW TFMDLPYILG YYAIGHVVTF CALSRVQDRI 720 IRTDLGTVDL SLPSERLKAL VPCHRIASLL PLLADRCFNP STNCDGGSDK MLPYSDFERF 780 DMGNGNAIEM TPTTVTRFYS NIRKATAVKE IYDFLGQRIP HAEYIHRSLE KNLALVFKPR 840 GCKFKPTNCN QLVEALMYVT KALVALHDLS FMHRDICWEK VIRNERDNEW FVCGFEEAVG 900 APQIYPHKLV MVGDAAARGR HAPEMERGLH GVKVDVWGVG NLVRSCGLTG VPKMLRELQN 960 RCLDQNPEKR PTAADCYHHL LQLQSSLQSA TVXGVXM

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence Send to blast

MGDKKGETTK KNPQQTQQQQ QQKQQISPSP NDQQPPPTAI NISGAAAAAG VPFNIPPPLF  60
VPTGTPTTSS SSPFDQHQFE AAVNPKRPRF TSTTGQWKLL PSPSSQQKQP QVPILPSEST  120
PSPXKKKTQL SQPHVSTIGA ASSSDTASSS PPHSPLPSLS ATSGQDTNKT VAGDPQNLVH  180
HPHQFRKGKY VSPVWKPNEM LWLARGWRIQ YQGGAAGGSS DHGSGSSSRT EQLQTESGGA  240
TTTHSRGKTR GDKDMEVADF LQKHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGSEREQVG  300
KSYFRLSPYE RKLHRLPASF DEEVFVELSQ FMGSRTRTPQ SRLGSIGDDT RSALVMTRSL  360
PQPPSFKEDD FPLSGRGNQL MIMRGEGEPF YHGGRGTFLG FHHHDQSSID FTTGLSSSSS  420
KELRRIGKIR MTWEESVSLW AEEGEHHRGR VRLQGLSFLN ADELTFFDDS MVACTMEAFE  480
DGPFGGFSVD RFVSGQQVKV LGRRKPSSTN SAMPPWEFQD PTEYYVGCLR VPPPSLPTLL  540
ELQWYVQEPP PEELRFPLRK DVYRDLPQGK EIFFTTSTEL LDCRAITYDI LSPIVRTNPS  600
LAAATATSRD SFIPIWDDCI NRIVSKFCSL EMVFIRKPNS SSPTEPLQDQ WPNMTGFVRN  660
FCLWRGEEAH NLKDVRDINP SSSIVEKLLW TFMDLPYILG YYAIGHVVTF CALSRVQDRI  720
IRTDLGTVDL SLPSERLKAL VPCHRIASLL PLLADRCFNP STNCDGGSDK MLPYSDFERF  780
DMGNGNAIEM TPTTVTRFYS NIRKATAVKE IYDFLGQRIP HAEYIHRSLE KNLALVFKPR  840
GCKFKPTNCN QLVEALMYVT KALVALHDLS FMHRDICWEK VIRNERDNEW FVCGFEEAVG  900
APQIYPHKLV MVGDAAARGR HAPEMERGLH GVKVDVWGVG NLVRSCGLTG VPKMLRELQN  960
RCLDQNPEKR PTAADCYHHL LQLQSSLQSA TVXGVXM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008378133.2	0.0	uncharacterized protein LOC103441207
TrEMBL	A0A498KS42	0.0	A0A498KS42_MALDO; Uncharacterized protein
STRING	XP_008378133.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-08	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000144669