PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000145320
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 879aa    MW: 102540 Da    PI: 8.5516
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000145320genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.52.2e-18309415188
           FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkek.dgkwe 77 
                    ++Y++Y+++ GF +r+++s+ks +r++e+t+++fvCs +gk + ++++                  +k++r+ ++ ++gCka+++v  +k ++kw 
  MDP0000145320 309 NYYEDYGRQEGFWIRIRTSSKSrRRSNEVTNAQFVCSHQGKYNMQSENeddmndndeqevcdmkkGKKRQRSCSTVKCGCKATMRVVHDKwTNKWI 404
                    69***************99999788999*************999999999************98666666677889***********9999***** PP

           FAR1  78 vtkleleHnHe 88 
                    v+ ++  HnH 
  MDP0000145320 405 VSVFSDIHNHR 415
                    **********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.11E-6190225IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.7E-14190217IPR009072Histone-fold
PfamPF001255.6E-7191225IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:2.70.170.107.0E-4218268IPR006202Neurotransmitter-gated ion-channel ligand-binding domain
PfamPF031016.3E-16309415IPR004330FAR1 DNA binding domain
PfamPF105512.6E-17535601IPR018289MULE transposase domain
PROSITE profilePS5096610.163770806IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-5780802IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011781808IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0005230Molecular Functionextracellular ligand-gated ion channel activity
GO:0008270Molecular Functionzinc ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MNSYIRSHVL SKRHPTVNTS QRRRNAEMLQ RALEERKKLN NIGGEWHAXG RPRCSRWCSK  60
KVGWGRTLRA AGQGPVQQSG ERGRVRLGPA LCLRRLGSHD PVLFPGAPSA RVERGEEAWA  120
SPFVGLACMQ KRKXRKAFRP CWAASCHESA YMLELKFKKE EALVVAVFRL PLCRNRNNPF  180
AQPPASRDPV REIRKYQKSI ELLIRKLPFQ RLVHELVQDY KTDLRPIFNL SSELTVEIGA  240
SSFTLHKVSE TSSEFIFLAL MDPQLEDVEL APVQEKSDTD NCHTPKRTDQ ALETPYVGRV  300
FETMEAARNY YEDYGRQEGF WIRIRTSSKS RRRSNEVTNA QFVCSHQGKY NMQSENEDDM  360
NDNDEQEVCD MKKGKKRQRS CSTVKCGCKA TMRVVHDKWT NKWIVSVFSD IHNHRPVTPS  420
RRIMMKSNRH MHDAVKELTE AFHRENLQIG KVPSIFGGAQ NVGFDNRDCY NHLRNVRHRE  480
LERGDAQSVL NYFRKKQAKN PQFFYAIQCD ENGRATNFFL VDSRSRMAYH YFGDVVSFDT  540
TYRTNKYEMP FAPFTGVNHH FQSIQFGCAL LQDETEKTFL WLFETMVGSY GRSSSCIYTH  600
RSRFGNGSSN FTEEFEQQWE NLIKEYELEE NEWLAQLYKI RESWVPVFNR GTFFAGMNTT  660
GHSEGINAFF DDFVTSTTNL KEFVVKYEQA INKIVTNESA EDFVSEHKYC IVDDDDFLLK  720
HVAKVYTRKM FEKFKEEWIN VNRLKVEDMG SVNQFHMYVV KKKIGEAEEF LVKFNLQTYE  780
GTCECQNFEF VGIXCRHIIK VLVRLDINVI PSHFIMERWK QGANKFRVMD SEELVRNDSQ  840
EEAEALRLNH MCRRATKLAC CATSSNELYT IYMEVLDEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024164366.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
TrEMBLA0A251QDD00.0A0A251QDD0_PRUPE; Uncharacterized protein
TrEMBLM5X3A30.0M5X3A3_PRUPE; Uncharacterized protein
STRINGEMJ135700.0(Prunus persica)
STRINGEMJ222960.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-99FAR1-related sequence 5