PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146339
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 170aa    MW: 19554.4 Da    PI: 9.9528
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146339genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-171769456
                   -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   + ++t++q++ Le+ F++n+++  e++  LAk+l ++ rqV +W+qN+Ra++k
  MDP0000146339 17 KKRLTQDQVKLLERSFASNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69
                   5679************************************************9 PP
2HD-ZIP_I/II105.93e-3416107293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +k+rl+++qvklLE+sF +++kLeperK  la++L + prqva+W+qn+RAR+kt+ lE +y+a+++++++  +e++rLek+ve+Lr elk+
  MDP0000146339  16 NKKRLTQDQVKLLERSFASNKKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLELNYNAIQAKLESALAEKRRLEKDVERLRGELKR 107
                    79*************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7751171IPR001356Homeobox domain
SMARTSM003896.0E-131475IPR001356Homeobox domain
CDDcd000867.70E-131772No hitNo description
SuperFamilySSF466893.34E-161779IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-171778IPR009057Homeodomain-like
PfamPF000467.9E-151769IPR001356Homeobox domain
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDFFQTSNHK NQFQHNKKRL TQDQVKLLER SFASNKKLEP ERKLLLAKQL AIPPRQVAIW  60
YQNKRARWKT QSLELNYNAI QAKLESALAE KRRLEKDVER LRGELKRAHE VVLALNQQAQ  120
VFPANPVICS VFDSSNCSDE VGVGSSSMQP HGDHAVKQLE ELYACLIGMQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365122.11e-124homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A498IMF71e-123A0A498IMF7_MALDO; Uncharacterized protein
STRINGXP_008365122.11e-123(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.15e-38homeobox protein 52