PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146397
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 214aa    MW: 25150 Da    PI: 8.8156
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146397genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-1215106199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv    d+++   l +p kf+ ++g++   s  + l+ + g +We++l  r++ g+++++kGW eF k   L+    +vF ++g+s+f  +v +
  MDP0000146397  15 FFKVI-LDDTSRDTKLKVPMKFVMKYGEE--LSSPVYLRLPCGSEWEIEL--RRCNGEVWFEKGWPEFSKFYSLDYAFWLVFGYEGNSRF--HVFI 103
                    56655.3456666779**********855..6778***************..**********************************9999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  MDP0000146397 104 FDR 106
                    987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-218108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-218108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.36E-1413105No hitNo description
PROSITE profilePS5086311.77314107IPR003340B3 DNA binding domain
PfamPF023627.2E-915106IPR003340B3 DNA binding domain
SMARTSM010194.8E-815107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MASLRPTFSS TIPHFFKVIL DDTSRDTKLK VPMKFVMKYG EELSSPVYLR LPCGSEWEIE  60
LRRCNGEVWF EKGWPEFSKF YSLDYAFWLV FGYEGNSRFH VFIFDRSCTE VDYPIKLPDK  120
EKTDYEDDES VEILDDFPTS RRRKGERYSS LPCPLPPKKK RKSYSRMHPL TEKDKAIALQ  180
RAIAFKSEKP HFKVAMQPSY IFGNLVNTLA QVII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141161RRKGERYSSLPCPLPPKKKRK
2156162PKKKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017180135.11e-158B3 domain-containing protein At1g49475-like
TrEMBLA0A498KHT01e-144A0A498KHT0_MALDO; Uncharacterized protein
STRINGXP_008339485.11e-157(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-26B3 family protein