PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146415
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26569.6 Da    PI: 10.8364
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146415genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94e-21162204345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     en+  rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk
  MDP0000146415 162 LENTNGRQATYAKRKNGIMKKANELSILCDIDIVLLMFSPTGK 204
                    589999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.1E-22152210IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.352152204IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-27152211IPR002100Transcription factor, MADS-box
CDDcd001202.74E-21153205No hitNo description
PRINTSPR004049.0E-17154174IPR002100Transcription factor, MADS-box
PfamPF003194.0E-19163205IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-17174189IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-17189210IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MKVHIGKVQG RHSLPALTAR DPDPITKACS NGPITGQDTI GRVSELRFDC QKGMLIGIVR  60
KRCGRRKKTR VVDQQHKSDE EETFHFFPGK YLTFLSCICI TTPPPNHHQA FNQYCSFFRV  120
NDNGRKIPSF SIFWTVKEGE FKRKIRGPKC RMGRVKLKIK GLENTNGRQA TYAKRKNGIM  180
KKANELSILC DIDIVLLMFS PTGKPSLCXG EGRKEQGRKE GRNGRRSNGE GRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.28e-29AGAMOUS-like 30