PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000146673
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 522aa    MW: 55798.2 Da    PI: 6.4313
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000146673genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.7e-39159219262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ss
  MDP0000146673 159 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNSS 219
                    7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-31150216IPR003851Zinc finger, Dof-type
PfamPF027018.8E-32161217IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.798163217IPR003851Zinc finger, Dof-type
PROSITE patternPS013610165201IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MSSESEGGGH MIKLFGKTIP LAMAPLNRES SSSIDVRCGA VDSDVAATAC GGGGGGGAED  60
CSETSQKLSS SSAATNSREE KSEREEDAQK EETISGKELA ADKQHDDTSD RITEDIKAPT  120
TSSGISENPK TPSADRETSS KNGDLSETGS SQDKTLKKPD KILPCPRCNS MDTKFCYYNN  180
YNVNQPRHFC KNCQRYWTAG GIMRNVPVGA GRRKNKNSSA SQYRHIFMSD ALQAAHASTA  240
NGAHNATLGS NGTVLTFGSD SPLCESMASV LNLAERNQNC VQNGFHGPEQ RLLVSPTAGD  300
NGDDRSSGSS ITASNSTERG GRASSQEPSA QNCQTFPPQV PCFPGSPWPY PWNSAQWASA  360
MPPPGFCHSG FPMSFYPAPP YWGCTVPGPW NVPCLSPSST LSHCATRPGP NSPTLGKHSR  420
DEDIPNPSSS QNEEPAKENS SERCVWIPKT LRIDDPNEAA RSSIWATLGI KNEKGNCTNE  480
GGGLFKAFQS KGDEKNHVVE ASPVLQANPA AFSRSLNFRE RT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.116390.0bud| fruit| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516339e-60AM451633.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X095025.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350923.10.0cyclic dof factor 2-like
TrEMBLA0A498IBV80.0A0A498IBV8_MALDO; Uncharacterized protein
STRINGXP_008350923.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-105cycling DOF factor 2