PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000147190

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 715aa MW: 81976.6 Da PI: 6.718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000147190	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.3	1.4e-24	71	156	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 YneYA ++GFs+rk++ ++ +ng + +f+Cskeg+r++++ e+++++r +rtgC+ak++ +e dg+w+v++++ eHnHela MDP0000147190 71 LYNEYAARTGFSIRKKQRRYD-KNGDLSTLNFCCSKEGFRQDSDPC-EEKKTNRLDERTGCQAKIQFLLE-DGEWKVSTFDPEHNHELA 156 7*************98887.7777************9988.999***************9.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-21	71	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-20	278	360	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MDEDSNPDQG ITDGDSNPDE SSFLQVDSNP DEGSFLQVDS NPDQVINVEG NSYAGDLYGK 60 IVKNEQEAYD LYNEYAARTG FSIRKKQRRY DKNGDLSTLN FCCSKEGFRQ DSDPCEEKKT 120 NRLDERTGCQ AKIQFLLEDG EWKVSTFDPE HNHELAMPEE RQFLRSNRKI LEDDMGVIKT 180 MVNAGIRTTN TYSYLAEEVG ESQNVGFTKT NCYNFVSREK RIMLEAGDAQ SLINHFKRKQ 240 VEDPMFFYTV QVDQENQMTN FFWRDGRSII DYECFGDVVI FDTTYRTNKY NMICAPFVCA 300 FLLDEKTATF EWLFEAFLES MGNRKPRTIF TNQCQAMANA IMVVFPETCH RLCTWHISMN 360 ATRNIPTLYG IPEFKRLFNK CLDGCQTELE FQQTWDAMIE EFNVAQNIWL KGLYAIREKW 420 CPVFSQDAFS VRIKSTQRSE SMNNVFHRMS TKTMTLTEFV LHYEKQANGM HSKELEETFR 480 CKQGLPSTAA KKNGFLKRAA SVYTRKIYKF LAYEFVGSLA VKMHEVESDG TFQTFELNEE 540 GHRTVYVVKF NSSTLNISCI CKRSFSNTNQ YILKRWTKXA KKEXNENEHG ESLHAPVLNP 600 PSVRPKGISN ARLKSHMEKH KKKTSNVLGS SKKSKPPSSG GPSHTANANA HSHLTNQFYP 660 TMTMLTANSH ACFPSPNQFY PTTKLSTTNV QTGLPLSNQD AFPCGFEEHQ DACNS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MDEDSNPDQG ITDGDSNPDE SSFLQVDSNP DEGSFLQVDS NPDQVINVEG NSYAGDLYGK  60
IVKNEQEAYD LYNEYAARTG FSIRKKQRRY DKNGDLSTLN FCCSKEGFRQ DSDPCEEKKT  120
NRLDERTGCQ AKIQFLLEDG EWKVSTFDPE HNHELAMPEE RQFLRSNRKI LEDDMGVIKT  180
MVNAGIRTTN TYSYLAEEVG ESQNVGFTKT NCYNFVSREK RIMLEAGDAQ SLINHFKRKQ  240
VEDPMFFYTV QVDQENQMTN FFWRDGRSII DYECFGDVVI FDTTYRTNKY NMICAPFVCA  300
FLLDEKTATF EWLFEAFLES MGNRKPRTIF TNQCQAMANA IMVVFPETCH RLCTWHISMN  360
ATRNIPTLYG IPEFKRLFNK CLDGCQTELE FQQTWDAMIE EFNVAQNIWL KGLYAIREKW  420
CPVFSQDAFS VRIKSTQRSE SMNNVFHRMS TKTMTLTEFV LHYEKQANGM HSKELEETFR  480
CKQGLPSTAA KKNGFLKRAA SVYTRKIYKF LAYEFVGSLA VKMHEVESDG TFQTFELNEE  540
GHRTVYVVKF NSSTLNISCI CKRSFSNTNQ YILKRWTKXA KKEXNENEHG ESLHAPVLNP  600
PSVRPKGISN ARLKSHMEKH KKKTSNVLGS SKKSKPPSSG GPSHTANANA HSHLTNQFYP  660
TMTMLTANSH ACFPSPNQFY PTTKLSTTNV QTGLPLSNQD AFPCGFEEHQ DACNS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028962221.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251QFY5	0.0	A0A251QFY5_PRUPE; Uncharacterized protein
STRING	XP_008359347.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-89	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000147190