PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000148221
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 186aa    MW: 20769.4 Da    PI: 8.6234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000148221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.0002161961454
                   HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  MDP0000148221 61 EKLGERIVALQQLVSPF-----GKTDTASVLLEAMEYIRFL 96
                   56667888899999887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.4514796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002855102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-659101No hitNo description
SuperFamilySSF474591.19E-1059109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-861104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTEHKRSPCS VDQSSITSLP SKRHKTDLSF STKVLPLLSP LIFYILGDLX YXCACPLERK  60
EKLGERIVAL QQLVSPFGKT DTASVLLEAM EYIRFLHEQV KVLSAPYLQG TPTANTQIPQ  120
MTVLQKNAMQ CDXMFMELKP YSLRSRGLSL VPVSSTIGVA QSNGADIWAP IKTTSPKFEN  180
DISHFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369200.19e-92transcription factor bHLH153 isoform X2
RefseqXP_028956771.12e-91transcription factor bHLH153 isoform X1
RefseqXP_028956772.19e-92transcription factor bHLH153 isoform X2
SwissprotQ7XJU25e-53BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A498K3H91e-79A0A498K3H9_MALDO; Uncharacterized protein
STRINGXP_008369199.17e-91(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.52e-55bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]