PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000149037

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 229aa MW: 26031.2 Da PI: 8.9028

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000149037	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.7	4.6e-29	62	150	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GF +r++ +++sk++g+++ rt+vC+keg+r++++++ +k+ ++r++tr+gC+a+l vkk + gkw+v+ +++eH+H+l+p MDP0000149037 62 FYNAYATRMGFVTRMNDMYRSKHDGTVIGRTLVCNKEGFRKPDRRD-KKTLKPRTQTRVGCRAMLSVKKLSVGKWVVKWFVKEHTHALTP 150 *****************************************999.99************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-26	62	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MIHESDGASV GTSLVDMSHL FGQDHDDDQR TRNSCKDGSS LVQPHEPYVG QEFDSQESAL 60 AFYNAYATRM GFVTRMNDMY RSKHDGTVIG RTLVCNKEGF RKPDRRDKKT LKPRTQTRVG 120 CRAMLSVKKL SVGKWVVKWF VKEHTHALTP NKAAKGLVDD QVPDDKTKIA ELTNXLFLER 180 KRSAALREIV DLLFNHIEEH TQDLSKKLQH VVDNVKELES EGKNCRSLG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11058	0.0	bud\| flower\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008355862.2	1e-171	protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBL	A0A498KA83	1e-165	A0A498KA83_MALDO; Uncharacterized protein
STRING	XP_008355862.1	1e-171	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-69	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000149037