PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000149222
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 343aa    MW: 37590.5 Da    PI: 5.8849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000149222genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-114583244
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                   r +h+  E+rRR++iN++f+ Lr+l+P++    ++K + a+ L
  MDP0000149222 45 RSKHSVTEQRRRSKINERFQILRDLIPNS----DQKRDTASFL 83
                   899*************************8....5666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1441124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-2042124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.7094393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-94583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-1245107No hitNo description
SMARTSM003537.8E-649108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRTAAKGNQE EDEYDEEEFG SRKEGPSSNS NSKDAKNNDK ASAIRSKHSV TEQRRRSKIN  60
ERFQILRDLI PNSDQKRDTA SFLLEVXSVN ADNCVIEYVQ YLQEKVHKYE GSYQGWSPEP  120
AKLMPWRNSH WRVQSFVGNP QAIKSDTAPV SPFPGKFDEN NISINPNMLG NSTPNPVESD  180
PSRDVASKIV DRQPEIVNKG IPQPMPXPNI TPPVRSDGVL AHPLQGQISD AQSTQCPTTS  240
ASDALSQHEX LTVEGGTISI SSVYSQGLLN SLSQVLQTAG VDLSQASISV QIDLGNRANR  300
GLSSGTPASK DNENPHSSNQ TMAHFRDAGS GEDSDQAHKR LKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.9620.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389368.20.0transcription factor BIM2
SwissprotQ9CAA41e-113BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A498I7K50.0A0A498I7K5_MALDO; Uncharacterized protein
STRINGXP_008389368.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-98BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]