PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000149676
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24248.9 Da    PI: 10.2728
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000149676genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-31959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtfskRrng+lKKA+ELSvLCdaev +iifss+gklye++s
  MDP0000149676  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFAS 59
                   79***********************************************86 PP
2K-box76.66.5e-261542121169
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                    e++++s++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K
  MDP0000149676 154 ERETQSWYQEVTKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQTRQRK 212
                    6789******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.613161IPR002100Transcription factor, MADS-box
CDDcd002658.40E-39262No hitNo description
SuperFamilySSF554551.7E-29263IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-33323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-20154212IPR002487Transcription factor, K-box
PROSITE profilePS5129712.844157212IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVGLIIFSS RGKLYEFASA  60
GFSASLYVRG IITQLPQSQI DTFHPPSLSS SLLIPCGEVQ LTTGTCSNHL TRKLLFYLCA  120
RTRLSRSLTQ YPSMSKTLER YQRCSFTPPE NSIERETQSW YQEVTKLKAK YESLQRTQRH  180
LLGEDLGPLS VKELQNLEKQ LEGALAQTRQ RK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-20166166MEF2C
5f28_B5e-20166166MEF2C
5f28_C5e-20166166MEF2C
5f28_D5e-20166166MEF2C
6byy_A4e-20166166MEF2 CHIMERA
6byy_B4e-20166166MEF2 CHIMERA
6byy_C4e-20166166MEF2 CHIMERA
6byy_D4e-20166166MEF2 CHIMERA
6bz1_A5e-20166166MEF2 CHIMERA
6bz1_B5e-20166166MEF2 CHIMERA
6bz1_C5e-20166166MEF2 CHIMERA
6bz1_D5e-20166166MEF2 CHIMERA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.4701e-133fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0007631e-130AJ000763.1 Malus domestica mRNA for MADS-box protein, MADS11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020263036.12e-62MADS-box transcription factor 17-like
TrEMBLA0A2P5Y5L12e-52A0A2P5Y5L1_GOSBA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-35AGAMOUS-like 6