PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000150088
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 196aa    MW: 22397.2 Da    PI: 10.1214
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000150088genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.3e-1789142356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ F  ++++  e++  LAk lgL+ rqV +WFqNr a++k
  MDP0000150088  89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRWARWK 142
                    45689************************************************9 PP
2HD-ZIP_I/II121.44.5e-3989177290
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                    kkrrl+++qv++LE+sF+ e+kLeperKv la++Lglqprqva+WFqnr AR+ktk+lEkdye+L+++y++lk++ e+L+ke+++L++e
  MDP0000150088  89 KKRRLTADQVQFLEKSFDVENKLEPERKVLLAKDLGLQPRQVAIWFQNRWARWKTKHLEKDYEVLQANYNNLKANCESLSKENDKLKAE 177
                    9*************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.09484144IPR001356Homeobox domain
SMARTSM003896.6E-1686148IPR001356Homeobox domain
CDDcd000861.64E-1289145No hitNo description
PfamPF000462.2E-1489142IPR001356Homeobox domain
SuperFamilySSF466894.71E-1789155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1791151IPR009057Homeodomain-like
PROSITE patternPS000270119142IPR017970Homeobox, conserved site
PfamPF021838.9E-13144177IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAGGRVNGGR NLSVLSALLQ NQRSSEPFDS LFLSGSSTSS SAHFLGSRSM VSFQNVRGGR  60
GLNKSLFHQY DHEDNREEDL GKYLHQLGKK RRLTADQVQF LEKSFDVENK LEPERKVLLA  120
KDLGLQPRQV AIWFQNRWAR WKTKHLEKDY EVLQANYNNL KANCESLSKE NDKLKAEQRQ  180
ATGKSEAGKI EAWMQV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.25940.0bud| cell culture| fruit| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346529.11e-143homeobox-leucine zipper protein HAT5-like
SwissprotQ940J11e-35ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A498HX632e-99A0A498HX63_MALDO; Uncharacterized protein
TrEMBLA0A498KPY64e-99A0A498KPY6_MALDO; Uncharacterized protein
STRINGXP_008346529.11e-142(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-37homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]