PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000150465
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24904 Da    PI: 9.9015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000150465genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2054107356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t +q++ Le+ Fe +++++ e++++LAkklgL+ rqV vWFqNrRa++k
  MDP0000150465  54 KKRRLTLDQVHMLEKSFETDNKLKPERKTQLAKKLGLQPRQVAVWFQNRRARWK 107
                    56689************************************************9 PP
2HD-ZIP_I/II133.95.7e-4353144192
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                    ekkrrl+ +qv++LE+sFe+++kL+perK++la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ +++ ke+++L++++ 
  MDP0000150465  53 EKKRRLTLDQVHMLEKSFETDNKLKPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDTLLSDYDSIIKENQKLKSQVV 144
                    69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.6749109IPR001356Homeobox domain
SMARTSM003891.5E-1952113IPR001356Homeobox domain
CDDcd000861.31E-1654110No hitNo description
SuperFamilySSF466891.03E-1954120IPR009057Homeodomain-like
PfamPF000461.2E-1754107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-2156116IPR009057Homeodomain-like
PRINTSPR000312.8E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000312.8E-689105IPR000047Helix-turn-helix motif
PfamPF021839.7E-18109150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MLFLGNPDHV FRGPRSMMGL MDQESSRRRP FFSSSSSQDE LFDEECYDEQ LPEKKRRLTL  60
DQVHMLEKSF ETDNKLKPER KTQLAKKLGL QPRQVAVWFQ NRRARWKTKQ LERDYDLLKS  120
SYDTLLSDYD SIIKENQKLK SQVVSINEKL GGKEQASSTK AAAFAADDHD DEKRDPLLPT  180
GNQLVERQGG GPPELRERRK CRGGRGRRPS AYGQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.115230.0cell culture| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6787880.0JQ678788.1 Malus x domestica HB-1 (hb-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315708.11e-109homeobox-leucine zipper protein HAT5-like
SwissprotQ022839e-65HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A222U9V31e-110A0A222U9V3_MALDO; Homeodomain leucine zipper protein
STRINGXP_008367440.11e-130(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]