PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152089
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 253aa    MW: 29104.5 Da    PI: 9.655
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152089genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-11122207196
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f+kv tpsdv+ ++r+v+p++  +++         ++     g    + +     + +yvl+kGW  Fvk+++Lk+gD+v F+++  +++++++  
  MDP0000152089 122 FEKVATPSDVGGLNRMVIPNNMPRSIF-------RMRWGKCGGLDIVIGV---VVRASYVLSKGWIFFVKEKKLKVGDVVKFERSVGEDKKMFIYC 207
                    8999***************99987773.......2444444454444444...33456*************************8755777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.406360IPR001471AP2/ERF domain
SMARTSM003803.9E-41364IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-91358IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-91558IPR001471AP2/ERF domain
CDDcd000187.32E-131658No hitNo description
Gene3DG3DSA:2.40.330.103.7E-13117210IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-13119208IPR015300DNA-binding pseudobarrel domain
CDDcd100179.70E-10121208No hitNo description
PfamPF023622.3E-9122208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEQMVQVQTS CMPFSRWGAQ IYGKSHRVGL GTFNDEEEAA KTYDIASLKF RGLDAIINNS  60
RNKMKPYERD VTEALFLESH SKAEIVDMLR KHSYANELEI YNVWKHYLDL RDTCSSGREL  120
LFEKVATPSD VGGLNRMVIP NNMPRSIFRM RWGKCGGLDI VIGVVVRASY VLSKGWIFFV  180
KEKKLKVGDV VKFERSVGED KKMFIYCRLR NLDMSGIREM HGRVGDPLRT VXDHGAVRLF  240
GVNISWKPVH CRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-1811921611126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357037.11e-108PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822804e-53RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A498J5531e-105A0A498J553_MALDO; Uncharacterized protein
STRINGXP_009357037.11e-108(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-55related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]