PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000152774
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 338aa    MW: 37922.9 Da    PI: 9.1455
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000152774genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.32.1e-25691981127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                    l+pG+rF P++e+l+++yL  k +++       + i+e+d+y+++P +Lp+    ++ ++ ++ ++F+ + +       k+r +ksgyW+ +g+ +
  MDP0000152774  69 LAPGCRFYPSEEQLLCYYLSSKNAAEAgkSGGYDLIRELDLYEHDPFELPEsacySYGHGGRKRHWFCYTVRVL-----KERRAKSGYWRRKGRVR 159
                    579******************98887744445678**************9546653333555566666665543.....3455699********** PP

            NAM  91 evlsk.kgelvglkktLvfykgrap.kgektdWvmheyr 127
                    +v+ + ++ + g + ++vfy g++p ++++tdWv+ +y+
  MDP0000152774 160 DVVGRgGKVVLGRRSSFVFYLGNSPnDAVRTDWVLYQYA 198
                    ****95555689********886551678*********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-3063215IPR003441NAC domain
PROSITE profilePS5100533.85669215IPR003441NAC domain
PfamPF023652.3E-1471198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSFHSQQPRN PNKSTAPSEW LKCAGARTPQ PHRIAKAGTS NRKFPKTLKQ ADDLHLRMGD  60
PKATSLLSLA PGCRFYPSEE QLLCYYLSSK NAAEAGKSGG YDLIRELDLY EHDPFELPES  120
ACYSYGHGGR KRHWFCYTVR VLKERRAKSG YWRRKGRVRD VVGRGGKVVL GRRSSFVFYL  180
GNSPNDAVRT DWVLYQYAQV DHVKAAFVVC RIFVRSGSGN RISDHGLSSC AEESACTVRH  240
IGIQHDGFHT PNISENEKHG DTSVPRKNEM SKYPLRLDRD LDDRVMTGPV SISRIQPNEQ  300
VPASVLGGSN PILLDNLAAK QLLSIMEGDF IELDDLID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-20552213171NO APICAL MERISTEM PROTEIN
1ut4_B2e-20552213171NO APICAL MERISTEM PROTEIN
1ut7_A2e-20552213171NO APICAL MERISTEM PROTEIN
1ut7_B2e-20552213171NO APICAL MERISTEM PROTEIN
4dul_A2e-20552213171NAC domain-containing protein 19
4dul_B2e-20552213171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981180.0KF198118.1 Malus hupehensis NAC domain protein (NAC41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017178151.20.0NAC domain containing protein 52-like
TrEMBLS5RUW20.0S5RUW2_MALHU; NAC domain protein
STRINGXP_008337056.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.21e-19NAC family protein