PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000153538
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 887aa    MW: 97317.8 Da    PI: 6.4757
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000153538genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18e-24132233199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  MDP0000153538 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 223
                    99*****************************8544444..48************************************************..8899 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                     +l+++++r+
  MDP0000153538 224 NQLLLGIRRA 233
                    999****997 PP
2Auxin_resp1201.8e-39258341183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  MDP0000153538 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 341
                    79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-42124247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-21131232No hitNo description
PfamPF023625.1E-22132233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548132234IPR003340B3 DNA binding domain
SMARTSM010191.8E-24132234IPR003340B3 DNA binding domain
PfamPF065071.3E-34258341IPR010525Auxin response factor
SuperFamilySSF542773.38E-8745826No hitNo description
PfamPF023096.4E-7747834IPR033389AUX/IAA domain
PROSITE profilePS5174524.974752836IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MRLSSSSSSP GFNHQLQEGE MKCLNSELWH ACAGPLVSLP LLGSRVVYFP QGHSEQVAAS  60
TNKEVDAHFP NYPNLPPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLNPQE QKDVYLLPAE  120
LGAANKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDYSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NEKNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITGISDLDSV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE  360
IEPLTTFPMY PSPFPLRLKR PWASGVPSFH GLKDGDMGIN SPLMWLQGGL GDQGMQSLNF  420
QGFGVSPWMQ PRLDASMAGL QPDVYQAMAA AALQEMRAVD SSKCSSQSLL PFQQSSSVSN  480
GAAAVLQRQV LPQSQPQNAY LESFQESQAP AQAQQQQQHQ LQQSRHMHQL SVQHQIPNXM  540
SALPNFASIT PSQSASMQSI SSQPQQQSFP DPVGNPIPSS DVPPVHSMLG SLSQDGTSHL  600
LNLSGSNSAI SSSLLAKQTT GEPQLSSGAA QCVLPQVEQL RTPQSSFSEI TALPPFPGRE  660
YSAFQGGTDP QSNLLFGVNI DSSSLMLHNG IPNLRNIGNG NDSVSVPFGA SNYASGTGND  720
FPLNSDMTTS SCVDESGFLQ SSENVDQVNP TGTFVKVHKS GSFGRSLDIS KFSSYDDLRS  780
ELARMFGLEG QLKDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVYYIK ILSPLEVQQM  840
GKEGLNSVAS VPNNKLSNGS NTTVDYVGRQ DLRNSRNGIA SLGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631736243388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119640.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953807.10.0auxin response factor 6-like
RefseqXP_028953808.10.0auxin response factor 6-like
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM5WYY70.0M5WYY7_PRUPE; Auxin response factor
STRINGEMJ188890.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]