PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000154272
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 558aa    MW: 59762.9 Da    PI: 4.9906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000154272genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27e-09372420355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  MDP0000154272 372 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 420
                    58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.25E-11367424No hitNo description
SuperFamilySSF474597.33E-17367438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16370436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6372420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDMGEQDKFE LENRNDDPMN FSPGITPDWR FGGSNLTNTS XGLVATGNSM AVSKGDLVGS  60
SSRPSASMAE SFNPTLWDHP TSAQDLGFCD MNVQTSASTS DSLGIRKGIP ASLRSGIDRA  120
LDMCWNPPNS MLKGGMFLPN GPGVLPQSLS QFPADSAFIE RAARFSCFNG GNFSDMVNPF  180
GVPESMSMYS KGGGLMPWTQ ELVAGNGSKG VPGVHSQRNE LNGDVSLPME QGTTEGSPLK  240
NEKKSESLAK SHDEARHAIG GSGNESDEAD SSGGGGAGQE EPSMLEGAKP SSKGFKKRKR  300
SSRQANELDQ ANAQQPGESX MDITEFQDKG EQQPASTPNK TTGKQGKQGS QASDPPKEEY  360
IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRLDFN IEGLLAKDIL QSXIGPSSTL GFSPDIPMVY PQLHPSQPGL  480
IQAGLPGMGS SSDLLRSAMG SQMTQMTGGF KEPSQPQLPN VWEDELHNVV QMSYGGSTPP  540
SSQDVDGPTP PGQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295300KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269540.0bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355681.10.0PREDICTED: transcription factor bHLH49-like
TrEMBLA0A498I7J50.0A0A498I7J5_MALDO; Uncharacterized protein
STRINGXP_008339739.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-114bHLH family protein