PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155426
Common NameMYB25
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 253aa    MW: 29026.4 Da    PI: 7.8504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155426genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
    MDP0000155426 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding57.53e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE+e +++++++lG++ W++Ia+ ++ gRt++++k++w++ 
    MDP0000155426  67 RGNYSKEEEETIIKLHEKLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.779961IPR017930Myb domain
SuperFamilySSF466892.79E-3011108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002492.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001673.52E-91661No hitNo description
PROSITE profilePS5129425.9962116IPR017930Myb domain
SMARTSM007171.6E-1766114IPR001005SANT/Myb domain
PfamPF002499.2E-1767111IPR001005SANT/Myb domain
CDDcd001673.24E-1269112No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MVRTPCRDEN GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY SKEEEETIIK LHEKLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRTNKKQ  120
CNSSFSSSAT NTEETPSSSN LEAAVDQPIK KAIFPNAEST TALQVIKKSD DRVDNSSQLS  180
SSPQPSSSEV SSMSADDNWV NFVEDFNLSS MEAYADNQFI DDFWTKPFLA DNSYIPSGFY  240
TPLMDSEFLY PLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121175109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.169630.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280912.10.0myb-related protein Myb4-like
SwissprotQ7XBH43e-60MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A498J5G80.0A0A498J5G8_MALDO; Uncharacterized protein
STRINGXP_008379585.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-60myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]