PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155579
Common NameHSF3
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 440aa    MW: 49882.6 Da    PI: 5.0504
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155579genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36151052101
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++ ++++sw+e+g+sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+k++ e+         weF++++F +g ++ll++i
  MDP0000155579  15 FLTKTYDLVDDPSSNHMVSWTESGSSFVVWDPTEFAKEMLPMYFKHNNFSSFVRQLNTYGFRKIDPEQ---------WEFANEEFLRGGRHLLKNI 101
                    9***************************************************************9998.........******************* PP

                    XXXX CS
   HSF_DNA-bind  98 krkk 101
                    +r+k
  MDP0000155579 102 HRRK 105
                    **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5911104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3812104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEGSQGGSGG APAPFLTKTY DLVDDPSSNH MVSWTESGSS FVVWDPTEFA KEMLPMYFKH  60
NNFSSFVRQL NTYGFRKIDP EQWEFANEEF LRGGRHLLKN IHRRKPIHSH SMQNHEYTVA  120
LSDTEREEYE KKISRLNHDK SLLELELQRH QRENQEFEFQ VQILREQLQN MENRQKQYTA  180
FLAQLVQKPG FASVLVQQSE IHSKKRRLLN SNXFPDDFGM EGLNLNPQKE NLGSISTPII  240
KLDQLEXMES SLNFWEDFLH GIGEAMPEDV NDIGPLSQAS PIIVTEXQDT SXNSRPCSPR  300
SHLSSPNSMN AHSFPEVAAG SANILDILSI TSMFPTVDFR SKSSGIDMNS KPDSAPALAK  360
EMVVELEVKN AEPTKANDVF WEQCLTETPG LADALEVHSE RRDGDGKASD ANPAIQKKHW  420
WNTDNVDNFT NQIGRLTPAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-25610412120Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.163140.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1892386e-36KF189238.1 Frangula alnus subsp. alnus clone Contig6305 polymorphic genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281032.10.0heat stress transcription factor A-4b-like
RefseqXP_017179302.20.0heat stress transcription factor A-4b-like isoform X1
RefseqXP_017179303.20.0heat stress transcription factor A-4b-like isoform X1
RefseqXP_028952534.10.0heat stress transcription factor A-4b-like isoform X1
TrEMBLD9ZJ270.0D9ZJ27_MALDO; HSF domain class transcription factor
STRINGXP_008342766.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF141001620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-78heat shock transcription factor A4A