PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000155743
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 237aa    MW: 26696.4 Da    PI: 8.3805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000155743genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-163381355
            AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   + GVr+++ +grWvAeI+d s   ++ r +lg+f+ +eeAa a+++a++ l+g
  MDP0000155743 33 FLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDREEEAALAYDKAARLLRG 81
                   67******.7*********42...36***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.00E-283189No hitNo description
SMARTSM003801.0E-303298IPR001471AP2/ERF domain
PROSITE profilePS5103219.7963289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-273290IPR001471AP2/ERF domain
PRINTSPR003672.6E-63344IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-193389IPR016177DNA-binding domain
PfamPF008474.5E-103581IPR001471AP2/ERF domain
PRINTSPR003672.6E-65571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDSSSMSQAI QTQTFQENKE KNTRKGSKNG KXFLGVRQRP SGRWVAEIKD SSQKLRLWLG  60
TFDREEEAAL AYDKAARLLR GRNAKTNFPS CHILNTHEEN CSILRKNPRL YQLLQHAIMK  120
NHARSSSLNS VSSAKANLWD RSQMRGIDFD TLVEETIVCS SSGAATSGQD HGDHDEDRNN  180
KLCALSFGSC KVYSSVVVAP SFSSSSQCQQ AHNEEEKEGK FMEEKRGIDD EWRKDVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-143089363ATERF1
3gcc_A2e-143089363ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.73840.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374687.21e-161ethylene-responsive transcription factor ERN1-like
TrEMBLA0A498JN801e-156A0A498JN80_MALDO; Uncharacterized protein
STRINGXP_008374687.11e-160(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-26related to AP2 11