PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000156730

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 225aa MW: 25994.4 Da PI: 10.1267

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000156730	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.2	1.9e-30	122	209	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA++vGF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+l+vkk+k+gkw vt++ +eHnH+l+ MDP0000156730 122 FYDGYATQVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKTRAKR-TENRKPRAITREGCKAMLVVKKDKSGKWIVTRFIKEHNHPLV 209 9*****************************************99.9*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-28	122	209	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MHFFAAVDHS SANTLEFELK RFNRPPPPQN QKNQKGTNFL LPLYCRSQAN CWVAISLSQQ 60 NLRWNLITML IWAVDDEEPS XSKDEDVLES SNRKEAVTYE GNSDTEPFVG MEFESEEAAK 120 VFYDGYATQV GFIMRVDAFR RSMRDGKVVW RRLVCNKEGF RKTRAKRTEN RKPRAITREG 180 CKAMLVVKKD KSGKWIVTRF IKEHNHPLVG TPANGRRSML LSQTP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009358951.1	1e-111	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A498JVF8	1e-112	A0A498JVF8_MALDO; Uncharacterized protein
STRING	XP_009358951.1	1e-110	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-62	FAR1 family protein

Link Out ? help Back to Top
Phytozome	MDP0000156730