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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MDP0000156948 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 264aa MW: 29239.6 Da PI: 9.7503 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 35.7 | 2.2e-11 | 146 | 190 | 5 | 49 |
trihelix 5 qevlaLiearremeerlrrgklkkplWeevskkmrergferspkq 49
qe+laL+++ ++m+ ++r+++ k+plWeevskk+++ g++ s+k+
MDP0000156948 146 QETLALLQIWSDMDIAFRDESVKGPLWEEVSKKLAALGYHQSAKK 190
8*****************************************986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 264 aa Download sequence Send to blast |
MAPTSAPTRS ESTAASAPSG VSEKMGGKHP CSDPLSPPMP RKQPHLLCSP NLKSDPDPGP 60 GLDDNLDPKL KLLCGGCSLE SDVKQQQQND HKPTDPIGRR EIILRSSELT VVGAIFNLSG 120 KKLEYLWLSA QLLRIAYQPL KMSPCQETLA LLQIWSDMDI AFRDESVKGP LWEEVSKKLA 180 ALGYHQSAKK FCIGLSPSPT DLSPIAPFKA ITLNYLGRSV QLQVLKSTGD FSHLFRSDRK 240 SEEQQQNNKR RKQKKKREVQ GKKE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 238 | 254 | RKSEEQQQNNKRRKQKK |
| 2 | 250 | 257 | RKQKKKRE |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.10018 | 6e-47 | fruit| leaf | ||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G76880.1 | 1e-15 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | MDP0000156948 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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