PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000157124
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 252aa    MW: 28120.5 Da    PI: 4.9191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000157124genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.61.9e-1649912059
                   S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY 20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     rsYYrCt++   +C+++k+v+rs+edp+v+eitY+g+H+++
  MDP0000157124 49 KKRSYYRCTYRntqSCWATKQVQRSDEDPTVFEITYKGKHTCS 91
                   57********98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007748.7E-143892IPR003657WRKY domain
PfamPF031062.1E-144890IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-144891IPR003657WRKY domain
SuperFamilySSF1182902.48E-134991IPR003657WRKY domain
PROSITE profilePS5081112.4155188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLKCGGSPQS PIRAIASAPE SLMSANEGPC CVNNNRSLQD HQDLTAVSKK RSYYRCTYRN  60
TQSCWATKQV QRSDEDPTVF EITYKGKHTC SHGGSSVPPP PSPEKQERKR HNHNNTYQQQ  120
QSQGNQMSFP TNLRVNTENL DDRENTASPF SFTSSPFGSI SDDAFLSSML DDQSLFDHFN  180
QSLLSPAAGG SNYYFELPSQ MRNIAGNEQR SESDIISANN SSTNSPIPDM DFXLEPVELD  240
PYFPFDSPGF FL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.28610.0root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959531.11e-162LOW QUALITY PROTEIN: probable WRKY transcription factor 53
TrEMBLA0A498JJJ91e-162A0A498JJJ9_MALDO; Uncharacterized protein
STRINGXP_008343700.11e-163(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-22WRKY family protein