PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000158598

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 354aa MW: 39310.3 Da PI: 9.6834

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000158598	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.9	8.2e-16	16	90	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr 71 +Wt++e +aLi+++++++ +l+r++lk ++W++v++ + ++++qC++k+e+l++r++ +ke+++ + MDP0000158598 16 CWTHDESHALIAVYKDRWLTLGRSNLKSADWDSVASSVndrcPLVSPPKTAIQCRHKMEKLRRRFRTEKERASIH 90 8***********************************6433333448999*****************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.8E-17	15	100	No hit	No description
PROSITE profile	PS50090	6.156	17	77	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSPPAEPKSR TFPPPCWTHD ESHALIAVYK DRWLTLGRSN LKSADWDSVA SSVNDRCPLV 60 SPPKTAIQCR HKMEKLRRRF RTEKERASIH PGPAPFFSAW DLFQPMIDLE CDSPFVFGSN 120 PDLEIRVGVQ YGGGFRVRNY ESYRYLADSD QNLSDPDETT PKGAGFGGGF RVKDPVRGPN 180 SGVSAGYDRY GSRGSDGGSE FPVKSLGDRN LGPSDFRIKG YGKSNEKFNP KLISKRSGXN 240 GVGSRSGFNQ KFRGGMHSNG VGLEDLGGSS SGKGADDPIE AMASSIEFLG EVFVKMEKRK 300 MEMAGEMAKM RMKMEMKQNQ LIMESEKQMV DACVKALWET KRKKKMKVVS LDES

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSPPAEPKSR TFPPPCWTHD ESHALIAVYK DRWLTLGRSN LKSADWDSVA SSVNDRCPLV  60
SPPKTAIQCR HKMEKLRRRF RTEKERASIH PGPAPFFSAW DLFQPMIDLE CDSPFVFGSN  120
PDLEIRVGVQ YGGGFRVRNY ESYRYLADSD QNLSDPDETT PKGAGFGGGF RVKDPVRGPN  180
SGVSAGYDRY GSRGSDGGSE FPVKSLGDRN LGPSDFRIKG YGKSNEKFNP KLISKRSGXN  240
GVGSRSGFNQ KFRGGMHSNG VGLEDLGGSS SGKGADDPIE AMASSIEFLG EVFVKMEKRK  300
MEMAGEMAKM RMKMEMKQNQ LIMESEKQMV DACVKALWET KRKKKMKVVS LDES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009346164.1	0.0	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A498JYG9	0.0	A0A498JYG9_MALDO; Uncharacterized protein
STRING	XP_008362606.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-30	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000158598