PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000159062
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23116.2 Da    PI: 9.6541
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000159062genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.75.5e-171150241
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    ie++  r v+fskRr  ++K A+EL+++C+++v+++ifs
  MDP0000159062 11 LIESQHARXVSFSKRRSSLFKNASELCTMCAVQVLLVIFS 50
                   59*************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-18261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.708262IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-23385IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-11424IPR002100Transcription factor, MADS-box
PfamPF003194.1E-171258IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-112439IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-113960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRGRKKIQME LIESQHARXV SFSKRRSSLF KNASELCTMC AVQVLLVIFS LGRKPFSFGH  60
PSVHSVLNRF HQFQNPDAST NQNEATKEPV MQGLNDSFSH LLEQVKFEQK RGKKLNRKIM  120
EHSGPDWLKA PMDSLNLEEL RKVKETLVDV KKKIKKQGDE LLAEPLASSA NNSIELFHCP  180
ETNLVGDISS VHPQGSLTFR EEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028954309.11e-148agamous-like MADS-box protein AGL29
TrEMBLA0A314YUF03e-57A0A314YUF0_PRUYE; Agamous-like MADS-box protein AGL61
STRINGXP_009375893.11e-135(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2040945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-34AGAMOUS-like 29