PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000159269

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C3H

Protein Properties

Length: 257aa MW: 28893.2 Da PI: 8.8261

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000159269	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.5e-11	154	180	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H++ MDP0000159269 154 PGVPNCVYYMRTGFCGYGGRCQYNHPR 180 5789*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	8.793	78	106	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7	78	105	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.244	153	181	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.6E-6	153	180	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-8	155	180	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	157	181	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-5	159	180	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MFQDNVNVES AFGQALKVSL MLMEYQPWGK IVNISGTRRG VRRCLLSDNQ LLREAMTGGS 60 SIRAIWILNS LDAVVLSREC VQPCTFYLQN GQCKFGFTWK FDHRVQTMRY NLSASSLVDM 120 PVVQYPVGFL LATLAPSSSS LDLRPRSESC PERPGVPNCV YYMRTGFCGY GGRCQYNHPR 180 DRGAVVAAVR ATGDYPGRVG GTCMSENVGY LXLLQLFVVS LICHRPHSFP PFFERVHRES 240 TLGFLQIILP YELRPPT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12211	3e-92	fruit

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498JKW5	4e-86	A0A498JKW5_MALDO; Uncharacterized protein
STRING	XP_008374312.1	1e-98	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22451	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	3e-18	C3H family protein

Link Out ? help Back to Top
Phytozome	MDP0000159269