PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000160647
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 476aa    MW: 53143.1 Da    PI: 8.2586
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000160647genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.8e-12196270170
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHH CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvk 70 
                    f+k+l++sdv+ +gr++lpkk ae++  +++ +e+++lt++d  s+r We+k+++  +++s++yv++     Fv+
  MDP0000160647 196 FKKELKNSDVGPLGRIILPKKEAENNlpMLSDREGIQLTVRDvHSNRHWEFKYKFwsNNRSRMYVFEYTAAFFVH 270
                    89*********************999**8888999*******5566*******9977788888999866666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-17189262IPR015300DNA-binding pseudobarrel domain
CDDcd100179.08E-14194258No hitNo description
SuperFamilySSF1019361.96E-12194261IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-8196271IPR003340B3 DNA binding domain
SMARTSM010190.0033196284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MENFNPPSIP STTTITSAHK TNNSQSTCEP VSCLPSTTCS PSATQYRYYP AQYLAPNPGL  60
QFLHANNQYP YRQAGLHMYP FLVSAQPNMV LSREQASRDQ SGWILDALMS KSARNERKMA  120
RQRSLSLSRN AANAAVSCTC SPPLSRHPPF HGNDGDDDTR GIISTSSSGN GADLQNTKEQ  180
LYSFCTPDNK KLRPLFKKEL KNSDVGPLGR IILPKKEAEN NLPMLSDREG IQLTVRDVHS  240
NRHWEFKYKF WSNNRSRMYV FEYTAAFFVH ARKQYISVEK VQRPVHVAEP SSSKQRNTTT  300
NPTDQTIKIV PNINTSLKAN TTDNNKTNTN TNTNAKTPNT DAKTLGSNPY VASNLSSPSP  360
YTYVAGNKED ELSLEQLVEQ LKQDQETNIF ADALSMVSRD YREHEEATAL SNIAASHIET  420
STQPPSTLAV GIDPSSSSSS SQTRATMRMV DDDHFDLDDC YKGLGMLPEV NRYKYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-31186267384B3 domain-containing transcription factor LEC2
6j9c_D2e-31186267384B3 domain-containing transcription factor LEC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371389.10.0B3 domain-containing transcription factor LEC2-like
RefseqXP_008371392.10.0B3 domain-containing transcription factor LEC2-like
RefseqXP_017188077.10.0B3 domain-containing transcription factor LEC2-like
TrEMBLA0A498JZP50.0A0A498JZP5_MALDO; Uncharacterized protein
STRINGXP_008371388.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.14e-32B3 family protein